Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1907 and Dsui_1908 are separated by 75 nucleotides Dsui_1908 and Dsui_1910 are separated by 362 nucleotides Dsui_1910 and Dsui_1911 are separated by 134 nucleotides
Dsui_1907: Dsui_1907 - transcriptional regulator, at 2,010,386 to 2,011,264
_1907
Dsui_1908: Dsui_1908 - putative Fe-S-cluster redox enzyme, at 2,011,340 to 2,012,671
_1908
Dsui_1910: Dsui_1910 - hypothetical protein, at 2,013,034 to 2,013,381
_1910
Dsui_1911: Dsui_1911 - ParB-like partition protein, at 2,013,516 to 2,014,454
_1911
Position (kb)
2011
2012
2013 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2010.364 kb on - strand at 2010.376 kb on + strand at 2010.394 kb on + strand at 2010.403 kb on - strand at 2010.413 kb on - strand at 2010.424 kb on - strand at 2010.497 kb on - strand at 2010.759 kb on + strand at 2010.780 kb on - strand, within Dsui_1907 at 2010.836 kb on - strand at 2010.836 kb on - strand at 2010.866 kb on + strand, within Dsui_1907 at 2010.874 kb on - strand, within Dsui_1907 at 2010.902 kb on + strand at 2010.904 kb on + strand, within Dsui_1907 at 2011.402 kb on - strand at 2011.463 kb on + strand at 2011.471 kb on - strand at 2011.477 kb on + strand, within Dsui_1908 at 2011.531 kb on + strand, within Dsui_1908 at 2011.552 kb on + strand, within Dsui_1908 at 2011.560 kb on - strand at 2011.655 kb on - strand at 2012.070 kb on + strand, within Dsui_1908 at 2012.100 kb on + strand, within Dsui_1908 at 2012.265 kb on + strand, within Dsui_1908 at 2012.488 kb on - strand, within Dsui_1908 at 2012.519 kb on + strand, within Dsui_1908 at 2012.704 kb on - strand at 2012.704 kb on - strand at 2012.724 kb on + strand at 2012.724 kb on + strand at 2013.264 kb on + strand, within Dsui_1910 at 2013.406 kb on - strand at 2013.443 kb on + strand at 2013.615 kb on - strand, within Dsui_1911
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 2,010,364 - +2.4 2,010,376 + +3.4 2,010,394 + +2.4 2,010,403 - +0.8 2,010,413 - +1.4 2,010,424 - +0.3 2,010,497 - +0.4 2,010,759 + +1.8 2,010,780 - Dsui_1907 0.45 -0.6 2,010,836 - +1.4 2,010,836 - +1.4 2,010,866 + Dsui_1907 0.55 +1.4 2,010,874 - Dsui_1907 0.56 -0.2 2,010,902 + +1.4 2,010,904 + Dsui_1907 0.59 -1.9 2,011,402 - -0.6 2,011,463 + +1.1 2,011,471 - -0.9 2,011,477 + Dsui_1908 0.10 +0.8 2,011,531 + Dsui_1908 0.14 +0.4 2,011,552 + Dsui_1908 0.16 +0.2 2,011,560 - +1.4 2,011,655 - +0.4 2,012,070 + Dsui_1908 0.55 +0.5 2,012,100 + Dsui_1908 0.57 -0.2 2,012,265 + Dsui_1908 0.69 +2.4 2,012,488 - Dsui_1908 0.86 -0.5 2,012,519 + Dsui_1908 0.89 +0.0 2,012,704 - -0.0 2,012,704 - -0.6 2,012,724 + +0.7 2,012,724 + +0.3 2,013,264 + Dsui_1910 0.66 -1.2 2,013,406 - +1.0 2,013,443 + -0.6 2,013,615 - Dsui_1911 0.11 +0.4
Or see this region's nucleotide sequence