Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1894 and Dsui_1895 overlap by 4 nucleotides Dsui_1895 and Dsui_1896 are separated by 72 nucleotides Dsui_1896 and Dsui_1897 are separated by 1 nucleotides Dsui_1897 and Dsui_1898 overlap by 13 nucleotides
Dsui_1894: Dsui_1894 - E3 Ubiquitin ligase, at 1,994,420 to 1,995,325
_1894
Dsui_1895: Dsui_1895 - hypothetical protein, at 1,995,322 to 1,995,894
_1895
Dsui_1896: Dsui_1896 - arabinose efflux permease family protein, at 1,995,967 to 1,997,220
_1896
Dsui_1897: Dsui_1897 - hypothetical protein, at 1,997,222 to 1,997,356
_1897
Dsui_1898: Dsui_1898 - putative signal transduction protein, at 1,997,344 to 1,998,252
_1898
Position (kb)
1995
1996
1997
1998 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1994.993 kb on + strand, within Dsui_1894 at 1995.188 kb on - strand, within Dsui_1894 at 1995.188 kb on - strand, within Dsui_1894 at 1995.333 kb on - strand at 1995.565 kb on - strand, within Dsui_1895 at 1995.565 kb on - strand, within Dsui_1895 at 1995.605 kb on - strand, within Dsui_1895 at 1995.653 kb on + strand at 1995.661 kb on - strand, within Dsui_1895 at 1995.689 kb on + strand at 1995.742 kb on - strand, within Dsui_1895 at 1995.813 kb on + strand, within Dsui_1895 at 1995.829 kb on - strand, within Dsui_1895 at 1995.934 kb on + strand at 1995.960 kb on + strand at 1995.992 kb on - strand at 1996.074 kb on + strand at 1996.082 kb on - strand at 1996.113 kb on + strand, within Dsui_1896 at 1996.155 kb on - strand, within Dsui_1896 at 1996.273 kb on - strand, within Dsui_1896 at 1996.310 kb on + strand, within Dsui_1896 at 1996.310 kb on + strand, within Dsui_1896 at 1996.333 kb on - strand at 1996.340 kb on + strand, within Dsui_1896 at 1996.362 kb on - strand at 1996.420 kb on + strand, within Dsui_1896 at 1996.420 kb on + strand, within Dsui_1896 at 1996.428 kb on - strand at 1996.448 kb on + strand, within Dsui_1896 at 1996.477 kb on + strand, within Dsui_1896 at 1996.530 kb on - strand, within Dsui_1896 at 1996.552 kb on + strand, within Dsui_1896 at 1996.552 kb on + strand, within Dsui_1896 at 1996.862 kb on - strand, within Dsui_1896 at 1996.931 kb on - strand, within Dsui_1896 at 1997.055 kb on - strand, within Dsui_1896 at 1997.113 kb on - strand at 1997.285 kb on - strand at 1997.309 kb on - strand, within Dsui_1897 at 1997.564 kb on + strand, within Dsui_1898 at 1997.591 kb on + strand, within Dsui_1898 at 1997.591 kb on - strand, within Dsui_1898 at 1997.638 kb on + strand, within Dsui_1898 at 1997.645 kb on - strand, within Dsui_1898 at 1997.650 kb on + strand, within Dsui_1898 at 1997.658 kb on - strand, within Dsui_1898 at 1997.694 kb on - strand, within Dsui_1898 at 1997.705 kb on + strand, within Dsui_1898 at 1997.804 kb on - strand, within Dsui_1898 at 1997.934 kb on + strand, within Dsui_1898 at 1997.942 kb on - strand, within Dsui_1898 at 1997.942 kb on - strand, within Dsui_1898 at 1998.039 kb on + strand, within Dsui_1898 at 1998.039 kb on + strand at 1998.047 kb on - strand, within Dsui_1898 at 1998.047 kb on - strand, within Dsui_1898 at 1998.064 kb on - strand, within Dsui_1898 at 1998.110 kb on - strand, within Dsui_1898 at 1998.207 kb on - strand at 1998.208 kb on + strand at 1998.216 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 1,994,993 + Dsui_1894 0.63 -1.0 1,995,188 - Dsui_1894 0.85 +0.2 1,995,188 - Dsui_1894 0.85 -1.5 1,995,333 - -1.5 1,995,565 - Dsui_1895 0.42 -1.2 1,995,565 - Dsui_1895 0.42 +0.4 1,995,605 - Dsui_1895 0.49 +1.4 1,995,653 + +0.4 1,995,661 - Dsui_1895 0.59 -0.1 1,995,689 + +1.4 1,995,742 - Dsui_1895 0.73 -0.4 1,995,813 + Dsui_1895 0.86 -0.1 1,995,829 - Dsui_1895 0.88 -0.6 1,995,934 + +3.4 1,995,960 + +0.4 1,995,992 - +0.4 1,996,074 + -0.7 1,996,082 - +2.4 1,996,113 + Dsui_1896 0.12 -0.6 1,996,155 - Dsui_1896 0.15 -0.6 1,996,273 - Dsui_1896 0.24 +1.0 1,996,310 + Dsui_1896 0.27 -0.5 1,996,310 + Dsui_1896 0.27 -0.1 1,996,333 - +0.8 1,996,340 + Dsui_1896 0.30 -1.2 1,996,362 - +0.4 1,996,420 + Dsui_1896 0.36 -1.4 1,996,420 + Dsui_1896 0.36 -1.0 1,996,428 - +0.0 1,996,448 + Dsui_1896 0.38 +0.4 1,996,477 + Dsui_1896 0.41 -0.0 1,996,530 - Dsui_1896 0.45 -1.4 1,996,552 + Dsui_1896 0.47 -1.6 1,996,552 + Dsui_1896 0.47 -0.3 1,996,862 - Dsui_1896 0.71 -1.3 1,996,931 - Dsui_1896 0.77 -0.1 1,997,055 - Dsui_1896 0.87 +0.4 1,997,113 - +0.8 1,997,285 - +1.4 1,997,309 - Dsui_1897 0.64 -1.2 1,997,564 + Dsui_1898 0.24 -0.2 1,997,591 + Dsui_1898 0.27 -0.2 1,997,591 - Dsui_1898 0.27 -0.9 1,997,638 + Dsui_1898 0.32 +0.2 1,997,645 - Dsui_1898 0.33 -0.4 1,997,650 + Dsui_1898 0.34 +0.4 1,997,658 - Dsui_1898 0.35 -0.2 1,997,694 - Dsui_1898 0.39 -0.4 1,997,705 + Dsui_1898 0.40 -0.4 1,997,804 - Dsui_1898 0.51 -0.3 1,997,934 + Dsui_1898 0.65 -0.2 1,997,942 - Dsui_1898 0.66 -0.5 1,997,942 - Dsui_1898 0.66 -0.1 1,998,039 + Dsui_1898 0.76 -1.0 1,998,039 + +0.6 1,998,047 - Dsui_1898 0.77 -0.5 1,998,047 - Dsui_1898 0.77 -0.0 1,998,064 - Dsui_1898 0.79 -0.2 1,998,110 - Dsui_1898 0.84 -0.2 1,998,207 - +0.8 1,998,208 + +0.0 1,998,216 - -0.6
Or see this region's nucleotide sequence