Strain Fitness in Dechlorosoma suillum PS around Dsui_1896

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1894 and Dsui_1895 overlap by 4 nucleotidesDsui_1895 and Dsui_1896 are separated by 72 nucleotidesDsui_1896 and Dsui_1897 are separated by 1 nucleotidesDsui_1897 and Dsui_1898 overlap by 13 nucleotides Dsui_1894: Dsui_1894 - E3 Ubiquitin ligase, at 1,994,420 to 1,995,325 _1894 Dsui_1895: Dsui_1895 - hypothetical protein, at 1,995,322 to 1,995,894 _1895 Dsui_1896: Dsui_1896 - arabinose efflux permease family protein, at 1,995,967 to 1,997,220 _1896 Dsui_1897: Dsui_1897 - hypothetical protein, at 1,997,222 to 1,997,356 _1897 Dsui_1898: Dsui_1898 - putative signal transduction protein, at 1,997,344 to 1,998,252 _1898 Position (kb) 1995 1996 1997 1998Strain fitness (log2 ratio) -1 0 1 2 3at 1994.993 kb on + strand, within Dsui_1894at 1995.188 kb on - strand, within Dsui_1894at 1995.188 kb on - strand, within Dsui_1894at 1995.333 kb on - strandat 1995.565 kb on - strand, within Dsui_1895at 1995.565 kb on - strand, within Dsui_1895at 1995.605 kb on - strand, within Dsui_1895at 1995.653 kb on + strandat 1995.661 kb on - strand, within Dsui_1895at 1995.689 kb on + strandat 1995.742 kb on - strand, within Dsui_1895at 1995.813 kb on + strand, within Dsui_1895at 1995.829 kb on - strand, within Dsui_1895at 1995.934 kb on + strandat 1995.960 kb on + strandat 1995.992 kb on - strandat 1996.074 kb on + strandat 1996.082 kb on - strandat 1996.113 kb on + strand, within Dsui_1896at 1996.155 kb on - strand, within Dsui_1896at 1996.273 kb on - strand, within Dsui_1896at 1996.310 kb on + strand, within Dsui_1896at 1996.310 kb on + strand, within Dsui_1896at 1996.333 kb on - strandat 1996.340 kb on + strand, within Dsui_1896at 1996.362 kb on - strandat 1996.420 kb on + strand, within Dsui_1896at 1996.420 kb on + strand, within Dsui_1896at 1996.428 kb on - strandat 1996.448 kb on + strand, within Dsui_1896at 1996.477 kb on + strand, within Dsui_1896at 1996.530 kb on - strand, within Dsui_1896at 1996.552 kb on + strand, within Dsui_1896at 1996.552 kb on + strand, within Dsui_1896at 1996.862 kb on - strand, within Dsui_1896at 1996.931 kb on - strand, within Dsui_1896at 1997.055 kb on - strand, within Dsui_1896at 1997.113 kb on - strandat 1997.285 kb on - strandat 1997.309 kb on - strand, within Dsui_1897at 1997.564 kb on + strand, within Dsui_1898at 1997.591 kb on + strand, within Dsui_1898at 1997.591 kb on - strand, within Dsui_1898at 1997.638 kb on + strand, within Dsui_1898at 1997.645 kb on - strand, within Dsui_1898at 1997.650 kb on + strand, within Dsui_1898at 1997.658 kb on - strand, within Dsui_1898at 1997.694 kb on - strand, within Dsui_1898at 1997.705 kb on + strand, within Dsui_1898at 1997.804 kb on - strand, within Dsui_1898at 1997.934 kb on + strand, within Dsui_1898at 1997.942 kb on - strand, within Dsui_1898at 1997.942 kb on - strand, within Dsui_1898at 1998.039 kb on + strand, within Dsui_1898at 1998.039 kb on + strandat 1998.047 kb on - strand, within Dsui_1898at 1998.047 kb on - strand, within Dsui_1898at 1998.064 kb on - strand, within Dsui_1898at 1998.110 kb on - strand, within Dsui_1898at 1998.207 kb on - strandat 1998.208 kb on + strandat 1998.216 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media
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1,994,993 + Dsui_1894 0.63 -1.0
1,995,188 - Dsui_1894 0.85 +0.2
1,995,188 - Dsui_1894 0.85 -1.5
1,995,333 - -1.5
1,995,565 - Dsui_1895 0.42 -1.2
1,995,565 - Dsui_1895 0.42 +0.4
1,995,605 - Dsui_1895 0.49 +1.4
1,995,653 + +0.4
1,995,661 - Dsui_1895 0.59 -0.1
1,995,689 + +1.4
1,995,742 - Dsui_1895 0.73 -0.4
1,995,813 + Dsui_1895 0.86 -0.1
1,995,829 - Dsui_1895 0.88 -0.6
1,995,934 + +3.4
1,995,960 + +0.4
1,995,992 - +0.4
1,996,074 + -0.7
1,996,082 - +2.4
1,996,113 + Dsui_1896 0.12 -0.6
1,996,155 - Dsui_1896 0.15 -0.6
1,996,273 - Dsui_1896 0.24 +1.0
1,996,310 + Dsui_1896 0.27 -0.5
1,996,310 + Dsui_1896 0.27 -0.1
1,996,333 - +0.8
1,996,340 + Dsui_1896 0.30 -1.2
1,996,362 - +0.4
1,996,420 + Dsui_1896 0.36 -1.4
1,996,420 + Dsui_1896 0.36 -1.0
1,996,428 - +0.0
1,996,448 + Dsui_1896 0.38 +0.4
1,996,477 + Dsui_1896 0.41 -0.0
1,996,530 - Dsui_1896 0.45 -1.4
1,996,552 + Dsui_1896 0.47 -1.6
1,996,552 + Dsui_1896 0.47 -0.3
1,996,862 - Dsui_1896 0.71 -1.3
1,996,931 - Dsui_1896 0.77 -0.1
1,997,055 - Dsui_1896 0.87 +0.4
1,997,113 - +0.8
1,997,285 - +1.4
1,997,309 - Dsui_1897 0.64 -1.2
1,997,564 + Dsui_1898 0.24 -0.2
1,997,591 + Dsui_1898 0.27 -0.2
1,997,591 - Dsui_1898 0.27 -0.9
1,997,638 + Dsui_1898 0.32 +0.2
1,997,645 - Dsui_1898 0.33 -0.4
1,997,650 + Dsui_1898 0.34 +0.4
1,997,658 - Dsui_1898 0.35 -0.2
1,997,694 - Dsui_1898 0.39 -0.4
1,997,705 + Dsui_1898 0.40 -0.4
1,997,804 - Dsui_1898 0.51 -0.3
1,997,934 + Dsui_1898 0.65 -0.2
1,997,942 - Dsui_1898 0.66 -0.5
1,997,942 - Dsui_1898 0.66 -0.1
1,998,039 + Dsui_1898 0.76 -1.0
1,998,039 + +0.6
1,998,047 - Dsui_1898 0.77 -0.5
1,998,047 - Dsui_1898 0.77 -0.0
1,998,064 - Dsui_1898 0.79 -0.2
1,998,110 - Dsui_1898 0.84 -0.2
1,998,207 - +0.8
1,998,208 + +0.0
1,998,216 - -0.6

Or see this region's nucleotide sequence