Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1622 and Dsui_1623 are separated by 220 nucleotides Dsui_1623 and Dsui_1624 are separated by 152 nucleotides Dsui_1624 and Dsui_1625 are separated by 70 nucleotides
Dsui_1622: Dsui_1622 - excinuclease ABC, A subunit, at 1,703,943 to 1,706,762
_1622
Dsui_1623: Dsui_1623 - tRNA-Thr, at 1,706,983 to 1,707,058
_1623
Dsui_1624: Dsui_1624 - dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein, at 1,707,211 to 1,707,978
_1624
Dsui_1625: Dsui_1625 - copper/silver-translocating P-type ATPase, at 1,708,049 to 1,710,490
_1625
Position (kb)
1707
1708 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1706.255 kb on + strand, within Dsui_1622 at 1706.421 kb on - strand, within Dsui_1622 at 1706.473 kb on + strand, within Dsui_1622 at 1706.702 kb on + strand at 1706.731 kb on - strand at 1706.731 kb on - strand at 1706.731 kb on - strand at 1706.776 kb on - strand at 1706.776 kb on - strand at 1706.788 kb on - strand at 1706.809 kb on + strand at 1706.953 kb on + strand at 1707.077 kb on + strand at 1707.080 kb on + strand at 1707.088 kb on - strand at 1707.199 kb on + strand at 1707.207 kb on - strand at 1707.217 kb on + strand at 1707.321 kb on + strand, within Dsui_1624 at 1707.388 kb on - strand at 1707.394 kb on + strand, within Dsui_1624 at 1707.407 kb on - strand, within Dsui_1624 at 1707.498 kb on + strand, within Dsui_1624 at 1707.501 kb on - strand at 1707.530 kb on + strand, within Dsui_1624 at 1707.571 kb on - strand at 1707.816 kb on + strand, within Dsui_1624 at 1707.834 kb on - strand, within Dsui_1624 at 1707.890 kb on + strand, within Dsui_1624 at 1707.892 kb on + strand, within Dsui_1624 at 1707.910 kb on + strand at 1707.953 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 1,706,255 + Dsui_1622 0.82 +0.0 1,706,421 - Dsui_1622 0.88 -0.7 1,706,473 + Dsui_1622 0.90 -0.6 1,706,702 + -0.6 1,706,731 - -2.1 1,706,731 - -0.3 1,706,731 - +0.5 1,706,776 - -0.8 1,706,776 - +0.1 1,706,788 - -0.2 1,706,809 + +0.9 1,706,953 + -0.1 1,707,077 + +0.1 1,707,080 + -0.3 1,707,088 - +1.2 1,707,199 + +1.6 1,707,207 - +2.8 1,707,217 + +1.2 1,707,321 + Dsui_1624 0.14 -1.4 1,707,388 - +0.7 1,707,394 + Dsui_1624 0.24 -0.6 1,707,407 - Dsui_1624 0.26 +0.1 1,707,498 + Dsui_1624 0.37 -0.4 1,707,501 - +0.9 1,707,530 + Dsui_1624 0.42 -1.1 1,707,571 - +1.4 1,707,816 + Dsui_1624 0.79 -0.8 1,707,834 - Dsui_1624 0.81 -0.8 1,707,890 + Dsui_1624 0.88 -1.4 1,707,892 + Dsui_1624 0.89 -0.4 1,707,910 + -1.0 1,707,953 - +1.2
Or see this region's nucleotide sequence