Strain Fitness in Dechlorosoma suillum PS around Dsui_1186

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1183 and Dsui_1184 are separated by 120 nucleotidesDsui_1184 and Dsui_1185 are separated by 39 nucleotidesDsui_1185 and Dsui_1186 are separated by 12 nucleotidesDsui_1186 and Dsui_1187 are separated by 162 nucleotides Dsui_1183: Dsui_1183 - hypothetical protein, at 1,236,859 to 1,237,032 _1183 Dsui_1184: Dsui_1184 - iron donor protein CyaY, at 1,237,153 to 1,237,470 _1184 Dsui_1185: Dsui_1185 - hypothetical protein involved in intracellular sulfur reduction, at 1,237,510 to 1,237,866 _1185 Dsui_1186: Dsui_1186 - penicillin-binding protein, 1A family, at 1,237,879 to 1,240,194 _1186 Dsui_1187: Dsui_1187 - type IV pilus assembly protein PilM, at 1,240,357 to 1,241,436 _1187 Position (kb) 1237 1238 1239 1240 1241Strain fitness (log2 ratio) -1 0 1at 1237.078 kb on - strandat 1237.104 kb on + strandat 1237.112 kb on - strandat 1237.116 kb on + strandat 1237.123 kb on - strandat 1237.124 kb on - strandat 1237.124 kb on - strandat 1237.124 kb on - strandat 1237.462 kb on - strandat 1237.493 kb on - strandat 1237.517 kb on + strandat 1237.525 kb on - strandat 1237.541 kb on - strandat 1237.552 kb on - strand, within Dsui_1185at 1237.615 kb on - strand, within Dsui_1185at 1237.615 kb on - strand, within Dsui_1185at 1237.615 kb on - strand, within Dsui_1185at 1237.852 kb on + strandat 1237.962 kb on - strandat 1237.970 kb on + strandat 1237.970 kb on + strandat 1237.992 kb on + strandat 1240.198 kb on - strandat 1240.260 kb on + strandat 1240.268 kb on + strandat 1240.268 kb on + strandat 1240.276 kb on - strandat 1240.406 kb on + strandat 1240.406 kb on + strandat 1240.410 kb on + strandat 1240.413 kb on - strandat 1240.414 kb on - strandat 1240.444 kb on + strandat 1240.495 kb on - strand, within Dsui_1187at 1240.508 kb on - strand, within Dsui_1187at 1240.510 kb on - strand, within Dsui_1187at 1240.603 kb on + strand, within Dsui_1187at 1240.626 kb on + strand, within Dsui_1187at 1240.686 kb on + strand, within Dsui_1187at 1240.834 kb on + strand, within Dsui_1187at 1240.881 kb on + strand, within Dsui_1187at 1240.881 kb on + strand, within Dsui_1187at 1240.889 kb on - strand, within Dsui_1187at 1240.889 kb on - strand, within Dsui_1187at 1240.901 kb on + strand, within Dsui_1187at 1240.937 kb on + strand, within Dsui_1187at 1240.941 kb on + strand, within Dsui_1187at 1241.013 kb on + strand, within Dsui_1187at 1241.021 kb on + strand, within Dsui_1187at 1241.094 kb on + strand, within Dsui_1187at 1241.102 kb on - strand, within Dsui_1187at 1241.112 kb on - strand, within Dsui_1187at 1241.156 kb on - strand, within Dsui_1187at 1241.168 kb on + strand, within Dsui_1187at 1241.168 kb on + strand, within Dsui_1187at 1241.176 kb on - strand, within Dsui_1187

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media
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1,237,078 - -0.7
1,237,104 + -0.4
1,237,112 - -0.2
1,237,116 + -0.7
1,237,123 - -1.6
1,237,124 - -0.1
1,237,124 - +0.1
1,237,124 - -0.5
1,237,462 - -0.1
1,237,493 - -0.3
1,237,517 + +0.2
1,237,525 - +0.6
1,237,541 - -0.2
1,237,552 - Dsui_1185 0.12 -1.3
1,237,615 - Dsui_1185 0.29 -0.6
1,237,615 - Dsui_1185 0.29 -0.3
1,237,615 - Dsui_1185 0.29 -0.6
1,237,852 + -0.3
1,237,962 - -0.1
1,237,970 + +0.6
1,237,970 + -0.7
1,237,992 + +0.2
1,240,198 - -0.4
1,240,260 + -0.2
1,240,268 + +0.1
1,240,268 + -0.6
1,240,276 - -0.4
1,240,406 + +0.0
1,240,406 + -0.1
1,240,410 + -1.3
1,240,413 - +0.6
1,240,414 - +0.7
1,240,444 + +0.0
1,240,495 - Dsui_1187 0.13 +0.1
1,240,508 - Dsui_1187 0.14 -0.2
1,240,510 - Dsui_1187 0.14 +0.4
1,240,603 + Dsui_1187 0.23 +0.2
1,240,626 + Dsui_1187 0.25 +0.2
1,240,686 + Dsui_1187 0.30 -0.3
1,240,834 + Dsui_1187 0.44 -0.1
1,240,881 + Dsui_1187 0.49 +0.2
1,240,881 + Dsui_1187 0.49 +0.0
1,240,889 - Dsui_1187 0.49 +0.1
1,240,889 - Dsui_1187 0.49 +0.1
1,240,901 + Dsui_1187 0.50 -0.7
1,240,937 + Dsui_1187 0.54 +0.3
1,240,941 + Dsui_1187 0.54 -0.5
1,241,013 + Dsui_1187 0.61 +0.1
1,241,021 + Dsui_1187 0.61 +0.2
1,241,094 + Dsui_1187 0.68 +0.2
1,241,102 - Dsui_1187 0.69 -0.8
1,241,112 - Dsui_1187 0.70 +0.2
1,241,156 - Dsui_1187 0.74 +0.7
1,241,168 + Dsui_1187 0.75 +0.3
1,241,168 + Dsui_1187 0.75 -0.2
1,241,176 - Dsui_1187 0.76 +1.0

Or see this region's nucleotide sequence