Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1122 and Dsui_1123 are separated by 150 nucleotides Dsui_1123 and Dsui_1124 are separated by 49 nucleotides Dsui_1124 and Dsui_1125 are separated by 61 nucleotides
Dsui_1122: Dsui_1122 - dihydroxy-acid dehydratase, at 1,169,218 to 1,171,077
_1122
Dsui_1123: Dsui_1123 - methyl-accepting chemotaxis protein, at 1,171,228 to 1,172,841
_1123
Dsui_1124: Dsui_1124 - prolipoprotein diacylglyceryl transferase, at 1,172,891 to 1,173,676
_1124
Dsui_1125: Dsui_1125 - Malonyl-CoA decarboxylase (MCD), at 1,173,738 to 1,175,066
_1125
Position (kb)
1171
1172
1173 Strain fitness (log2 ratio)
-2
-1
0
1 at 1171.443 kb on - strand at 1171.458 kb on - strand, within Dsui_1123 at 1171.502 kb on + strand, within Dsui_1123 at 1171.573 kb on - strand, within Dsui_1123 at 1171.575 kb on + strand, within Dsui_1123 at 1171.575 kb on + strand, within Dsui_1123 at 1171.705 kb on - strand, within Dsui_1123 at 1171.897 kb on + strand, within Dsui_1123 at 1171.900 kb on - strand, within Dsui_1123 at 1172.097 kb on + strand, within Dsui_1123 at 1172.112 kb on - strand, within Dsui_1123 at 1172.198 kb on - strand, within Dsui_1123 at 1172.213 kb on + strand, within Dsui_1123 at 1172.242 kb on + strand, within Dsui_1123 at 1172.273 kb on + strand, within Dsui_1123 at 1172.490 kb on + strand, within Dsui_1123 at 1172.493 kb on - strand, within Dsui_1123 at 1172.515 kb on + strand, within Dsui_1123 at 1172.525 kb on + strand, within Dsui_1123 at 1172.532 kb on - strand, within Dsui_1123 at 1172.799 kb on + strand at 1172.799 kb on + strand at 1172.807 kb on - strand at 1172.863 kb on + strand at 1173.702 kb on - strand at 1173.807 kb on + strand at 1173.820 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 1,171,443 - +0.5 1,171,458 - Dsui_1123 0.14 -2.1 1,171,502 + Dsui_1123 0.17 -0.2 1,171,573 - Dsui_1123 0.21 -0.5 1,171,575 + Dsui_1123 0.21 -0.8 1,171,575 + Dsui_1123 0.21 -0.1 1,171,705 - Dsui_1123 0.30 -0.5 1,171,897 + Dsui_1123 0.41 -0.5 1,171,900 - Dsui_1123 0.42 -0.2 1,172,097 + Dsui_1123 0.54 +0.1 1,172,112 - Dsui_1123 0.55 -0.9 1,172,198 - Dsui_1123 0.60 -1.1 1,172,213 + Dsui_1123 0.61 -1.9 1,172,242 + Dsui_1123 0.63 +0.3 1,172,273 + Dsui_1123 0.65 -0.8 1,172,490 + Dsui_1123 0.78 -0.0 1,172,493 - Dsui_1123 0.78 -0.7 1,172,515 + Dsui_1123 0.80 +0.0 1,172,525 + Dsui_1123 0.80 +0.6 1,172,532 - Dsui_1123 0.81 -1.1 1,172,799 + -0.5 1,172,799 + -0.5 1,172,807 - -1.3 1,172,863 + -0.1 1,173,702 - +1.2 1,173,807 + -0.5 1,173,820 + -0.7
Or see this region's nucleotide sequence