Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0001 and Dsui_0002 are separated by 67 nucleotides Dsui_0002 and Dsui_0003 are separated by 80 nucleotides
Dsui_0001: Dsui_0001 - aminodeoxychorismate synthase, component I, at 103 to 1,923
_0001
Dsui_0002: Dsui_0002 - putative redox protein, regulator of disulfide bond formation, at 1,991 to 2,218
_0002
Dsui_0003: Dsui_0003 - putative Zn-dependent protease, at 2,299 to 3,786
_0003
Position (kb) 0
1
2 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 0.084 kb on + strand at 0.089 kb on + strand at 0.137 kb on - strand at 0.152 kb on - strand at 0.178 kb on - strand at 0.178 kb on - strand at 0.385 kb on - strand, within Dsui_0001 at 0.423 kb on - strand, within Dsui_0001 at 0.579 kb on - strand, within Dsui_0001 at 0.645 kb on - strand, within Dsui_0001 at 0.710 kb on + strand at 0.749 kb on + strand, within Dsui_0001 at 0.857 kb on - strand, within Dsui_0001 at 0.857 kb on - strand, within Dsui_0001 at 0.919 kb on + strand, within Dsui_0001 at 1.018 kb on + strand at 1.056 kb on + strand at 1.360 kb on + strand, within Dsui_0001 at 1.368 kb on - strand, within Dsui_0001 at 1.488 kb on - strand, within Dsui_0001 at 1.514 kb on + strand, within Dsui_0001 at 1.613 kb on + strand, within Dsui_0001 at 1.621 kb on - strand, within Dsui_0001 at 1.810 kb on + strand at 1.823 kb on - strand at 1.846 kb on - strand at 1.846 kb on - strand at 1.894 kb on - strand at 2.403 kb on - strand at 2.450 kb on - strand, within Dsui_0003 at 2.534 kb on - strand, within Dsui_0003 at 2.548 kb on - strand, within Dsui_0003 at 2.572 kb on - strand, within Dsui_0003 at 2.577 kb on - strand, within Dsui_0003
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 84 + +0.4 89 + -1.3 137 - -0.5 152 - -0.2 178 - -0.8 178 - +0.7 385 - Dsui_0001 0.15 -0.9 423 - Dsui_0001 0.18 -0.6 579 - Dsui_0001 0.26 -1.3 645 - Dsui_0001 0.30 -0.5 710 + +1.4 749 + Dsui_0001 0.35 +1.1 857 - Dsui_0001 0.41 -0.6 857 - Dsui_0001 0.41 +3.0 919 + Dsui_0001 0.45 -0.8 1,018 + +1.0 1,056 + +1.4 1,360 + Dsui_0001 0.69 -1.8 1,368 - Dsui_0001 0.69 -0.8 1,488 - Dsui_0001 0.76 +2.4 1,514 + Dsui_0001 0.77 -1.2 1,613 + Dsui_0001 0.83 -1.4 1,621 - Dsui_0001 0.83 +0.8 1,810 + +0.1 1,823 - +0.8 1,846 - -0.4 1,846 - +0.3 1,894 - -0.5 2,403 - +0.3 2,450 - Dsui_0003 0.10 +0.8 2,534 - Dsui_0003 0.16 -0.3 2,548 - Dsui_0003 0.17 -2.0 2,572 - Dsui_0003 0.18 +0.1 2,577 - Dsui_0003 0.19 -1.4
Or see this region's nucleotide sequence