Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2050

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2049 and Shewana3_2050 are separated by 321 nucleotidesShewana3_2050 and Shewana3_2051 are separated by 69 nucleotidesShewana3_2051 and Shewana3_2052 are separated by 8 nucleotides Shewana3_2049: Shewana3_2049 - leucine-responsive transcriptional regulator (RefSeq), at 2,457,090 to 2,457,596 _2049 Shewana3_2050: Shewana3_2050 - DNA translocase FtsK (RefSeq), at 2,457,918 to 2,460,671 _2050 Shewana3_2051: Shewana3_2051 - outer membrane lipoprotein carrier protein LolA (RefSeq), at 2,460,741 to 2,461,361 _2051 Shewana3_2052: Shewana3_2052 - recombination factor protein RarA (RefSeq), at 2,461,370 to 2,462,701 _2052 Position (kb) 2457 2458 2459 2460 2461Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2456.993 kb on + strandat 2457.004 kb on - strandat 2457.004 kb on - strandat 2457.191 kb on + strand, within Shewana3_2049at 2457.191 kb on + strand, within Shewana3_2049at 2457.199 kb on - strand, within Shewana3_2049at 2457.219 kb on - strand, within Shewana3_2049at 2457.365 kb on + strand, within Shewana3_2049at 2457.378 kb on + strand, within Shewana3_2049at 2458.576 kb on + strand, within Shewana3_2050at 2461.455 kb on - strandat 2461.496 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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2,456,993 + -5.4
2,457,004 - -3.5
2,457,004 - -2.5
2,457,191 + Shewana3_2049 0.20 -4.7
2,457,191 + Shewana3_2049 0.20 -1.3
2,457,199 - Shewana3_2049 0.21 -4.6
2,457,219 - Shewana3_2049 0.25 -2.9
2,457,365 + Shewana3_2049 0.54 -3.6
2,457,378 + Shewana3_2049 0.57 -3.8
2,458,576 + Shewana3_2050 0.24 -1.3
2,461,455 - +0.3
2,461,496 + -0.8

Or see this region's nucleotide sequence