Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1714

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1713 and Shewana3_1714 are separated by 379 nucleotidesShewana3_1714 and Shewana3_1715 are separated by 31 nucleotidesShewana3_1715 and fur are separated by 93 nucleotides Shewana3_1713: Shewana3_1713 - succinyl-CoA synthetase (ADP-forming) alpha subunit (RefSeq), at 2,017,998 to 2,018,870 _1713 Shewana3_1714: Shewana3_1714 - GreA/GreB family elongation factor (RefSeq), at 2,019,250 to 2,019,657 _1714 Shewana3_1715: Shewana3_1715 - GCN5-related N-acetyltransferase (RefSeq), at 2,019,689 to 2,020,201 _1715 Shewana3_1716: fur - ferric uptake regulator (RefSeq), at 2,020,295 to 2,020,726 fur Position (kb) 2019 2020Strain fitness (log2 ratio) -1 0 1at 2018.964 kb on + strandat 2018.972 kb on - strandat 2019.001 kb on + strandat 2019.070 kb on + strandat 2019.077 kb on + strandat 2019.078 kb on - strandat 2019.080 kb on - strandat 2019.151 kb on - strandat 2019.199 kb on - strandat 2019.204 kb on - strandat 2019.259 kb on - strandat 2019.496 kb on + strand, within Shewana3_1714at 2019.523 kb on + strand, within Shewana3_1714at 2019.665 kb on + strandat 2019.915 kb on - strand, within Shewana3_1715at 2020.143 kb on + strand, within Shewana3_1715

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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2,018,964 + +0.6
2,018,972 - -0.6
2,019,001 + -0.1
2,019,070 + -0.6
2,019,077 + -0.7
2,019,078 - +0.5
2,019,080 - -1.0
2,019,151 - -0.9
2,019,199 - +0.3
2,019,204 - +0.5
2,019,259 - -0.0
2,019,496 + Shewana3_1714 0.60 -0.5
2,019,523 + Shewana3_1714 0.67 -0.9
2,019,665 + +0.1
2,019,915 - Shewana3_1715 0.44 -0.3
2,020,143 + Shewana3_1715 0.88 -0.1

Or see this region's nucleotide sequence