Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0765

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0764 and Shewana3_0765 are separated by 184 nucleotidesShewana3_0765 and ipk are separated by 112 nucleotidesipk and Shewana3_0767 are separated by 1 nucleotides Shewana3_0764: Shewana3_0764 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 885,489 to 887,351 _0764 Shewana3_0765: Shewana3_0765 - ribose-phosphate pyrophosphokinase (RefSeq), at 887,536 to 888,483 _0765 Shewana3_0766: ipk - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (RefSeq), at 888,596 to 889,450 ipk Shewana3_0767: Shewana3_0767 - outer membrane lipoprotein LolB (RefSeq), at 889,452 to 890,096 _0767 Position (kb) 887 888 889Strain fitness (log2 ratio) -1 0 1at 886.926 kb on + strand, within Shewana3_0764at 886.934 kb on - strand, within Shewana3_0764at 887.024 kb on - strand, within Shewana3_0764at 887.190 kb on + strandat 887.203 kb on - strandat 887.408 kb on - strandat 887.543 kb on - strandat 889.480 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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886,926 + Shewana3_0764 0.77 +0.3
886,934 - Shewana3_0764 0.78 +0.7
887,024 - Shewana3_0764 0.82 -0.2
887,190 + -1.0
887,203 - +0.5
887,408 - +0.1
887,543 - +1.6
889,480 - +0.2

Or see this region's nucleotide sequence