Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0655 and Shewana3_0656 are separated by 88 nucleotides Shewana3_0656 and Shewana3_0657 overlap by 8 nucleotides Shewana3_0657 and nrfA are separated by 224 nucleotides
Shewana3_0655: Shewana3_0655 - hypothetical protein (RefSeq), at 775,190 to 775,564
_0655
Shewana3_0656: Shewana3_0656 - two component LuxR family transcriptional regulator (RefSeq), at 775,653 to 776,282
_0656
Shewana3_0657: Shewana3_0657 - nitrate/nitrite sensor protein NarQ (RefSeq), at 776,275 to 778,071
_0657
Shewana3_0658: nrfA - cytochrome c552 (RefSeq), at 778,296 to 779,717
nrfA
Position (kb) 776
777
778
779 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 775.386 kb on + strand, within Shewana3_0655 at 775.537 kb on + strand at 775.537 kb on + strand at 775.758 kb on - strand, within Shewana3_0656 at 776.031 kb on + strand, within Shewana3_0656 at 776.079 kb on - strand, within Shewana3_0656 at 776.079 kb on - strand, within Shewana3_0656 at 776.120 kb on + strand, within Shewana3_0656 at 776.168 kb on - strand, within Shewana3_0656 at 776.224 kb on - strand at 776.266 kb on + strand at 776.274 kb on - strand at 776.383 kb on + strand at 776.390 kb on - strand at 776.499 kb on - strand, within Shewana3_0657 at 776.553 kb on - strand, within Shewana3_0657 at 776.622 kb on + strand, within Shewana3_0657 at 776.629 kb on - strand, within Shewana3_0657 at 776.675 kb on - strand, within Shewana3_0657 at 776.723 kb on + strand, within Shewana3_0657 at 776.723 kb on + strand, within Shewana3_0657 at 776.723 kb on + strand, within Shewana3_0657 at 776.795 kb on + strand, within Shewana3_0657 at 776.811 kb on + strand, within Shewana3_0657 at 776.825 kb on + strand, within Shewana3_0657 at 777.131 kb on - strand, within Shewana3_0657 at 777.170 kb on - strand, within Shewana3_0657 at 777.192 kb on + strand, within Shewana3_0657 at 777.200 kb on - strand, within Shewana3_0657 at 777.445 kb on - strand, within Shewana3_0657 at 777.450 kb on - strand, within Shewana3_0657 at 777.450 kb on - strand, within Shewana3_0657 at 777.636 kb on + strand, within Shewana3_0657 at 777.636 kb on + strand, within Shewana3_0657 at 777.702 kb on - strand, within Shewana3_0657 at 777.737 kb on + strand, within Shewana3_0657 at 777.837 kb on + strand, within Shewana3_0657 at 778.088 kb on + strand at 778.246 kb on + strand at 778.254 kb on - strand at 778.255 kb on - strand at 778.352 kb on - strand at 778.405 kb on - strand at 778.574 kb on + strand, within nrfA at 778.574 kb on + strand, within nrfA at 778.603 kb on - strand, within nrfA at 778.685 kb on - strand, within nrfA at 778.698 kb on + strand, within nrfA at 778.706 kb on - strand, within nrfA at 778.726 kb on - strand, within nrfA at 778.733 kb on + strand, within nrfA at 778.741 kb on - strand, within nrfA at 779.042 kb on + strand, within nrfA at 779.042 kb on + strand, within nrfA at 779.050 kb on - strand, within nrfA at 779.050 kb on - strand, within nrfA
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 775,386 + Shewana3_0655 0.52 -0.4 775,537 + -1.5 775,537 + +0.0 775,758 - Shewana3_0656 0.17 -0.3 776,031 + Shewana3_0656 0.60 -0.2 776,079 - Shewana3_0656 0.68 -1.6 776,079 - Shewana3_0656 0.68 -0.7 776,120 + Shewana3_0656 0.74 +3.4 776,168 - Shewana3_0656 0.82 +0.2 776,224 - -0.2 776,266 + +0.1 776,274 - -0.3 776,383 + -0.5 776,390 - +0.1 776,499 - Shewana3_0657 0.12 +0.3 776,553 - Shewana3_0657 0.15 -0.1 776,622 + Shewana3_0657 0.19 -0.0 776,629 - Shewana3_0657 0.20 -0.5 776,675 - Shewana3_0657 0.22 +0.2 776,723 + Shewana3_0657 0.25 +0.3 776,723 + Shewana3_0657 0.25 +0.1 776,723 + Shewana3_0657 0.25 +0.2 776,795 + Shewana3_0657 0.29 -0.4 776,811 + Shewana3_0657 0.30 -0.0 776,825 + Shewana3_0657 0.31 +0.5 777,131 - Shewana3_0657 0.48 -0.5 777,170 - Shewana3_0657 0.50 +0.0 777,192 + Shewana3_0657 0.51 +0.2 777,200 - Shewana3_0657 0.51 +0.2 777,445 - Shewana3_0657 0.65 +0.1 777,450 - Shewana3_0657 0.65 -0.3 777,450 - Shewana3_0657 0.65 -0.8 777,636 + Shewana3_0657 0.76 -0.5 777,636 + Shewana3_0657 0.76 +0.0 777,702 - Shewana3_0657 0.79 -0.5 777,737 + Shewana3_0657 0.81 -0.3 777,837 + Shewana3_0657 0.87 -0.7 778,088 + -0.2 778,246 + -1.2 778,254 - -0.3 778,255 - +0.1 778,352 - +0.5 778,405 - +0.2 778,574 + nrfA Shewana3_0658 0.20 -0.8 778,574 + nrfA Shewana3_0658 0.20 +0.7 778,603 - nrfA Shewana3_0658 0.22 -0.2 778,685 - nrfA Shewana3_0658 0.27 +0.8 778,698 + nrfA Shewana3_0658 0.28 -0.1 778,706 - nrfA Shewana3_0658 0.29 +0.0 778,726 - nrfA Shewana3_0658 0.30 -0.3 778,733 + nrfA Shewana3_0658 0.31 -0.8 778,741 - nrfA Shewana3_0658 0.31 -0.6 779,042 + nrfA Shewana3_0658 0.52 -2.6 779,042 + nrfA Shewana3_0658 0.52 +0.7 779,050 - nrfA Shewana3_0658 0.53 -0.2 779,050 - nrfA Shewana3_0658 0.53 -0.5
Or see this region's nucleotide sequence