Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0332

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0331 and Shewana3_0332 are separated by 0 nucleotidesShewana3_0332 and Shewana3_0333 are separated by 9 nucleotidesShewana3_0333 and Shewana3_0334 overlap by 4 nucleotides Shewana3_0331: Shewana3_0331 - monooxygenase, FAD-binding (RefSeq), at 365,164 to 366,471 _0331 Shewana3_0332: Shewana3_0332 - hypothetical protein (RefSeq), at 366,472 to 368,991 _0332 Shewana3_0333: Shewana3_0333 - hypothetical protein (RefSeq), at 369,001 to 369,843 _0333 Shewana3_0334: Shewana3_0334 - 4-hydroxybenzoyl-CoA thioesterase (RefSeq), at 369,840 to 370,274 _0334 Position (kb) 366 367 368 369Strain fitness (log2 ratio) -1 0 1 2at 365.611 kb on + strand, within Shewana3_0331at 365.629 kb on + strand, within Shewana3_0331at 365.645 kb on + strand, within Shewana3_0331at 365.663 kb on - strand, within Shewana3_0331at 365.799 kb on - strand, within Shewana3_0331at 365.814 kb on + strand, within Shewana3_0331at 365.878 kb on + strand, within Shewana3_0331at 366.017 kb on + strand, within Shewana3_0331at 366.017 kb on + strand, within Shewana3_0331at 366.025 kb on - strand, within Shewana3_0331at 366.150 kb on + strand, within Shewana3_0331at 366.193 kb on - strand, within Shewana3_0331at 366.449 kb on - strandat 366.561 kb on + strandat 366.612 kb on + strandat 366.627 kb on + strandat 366.628 kb on + strandat 366.656 kb on + strandat 366.666 kb on - strandat 366.769 kb on + strand, within Shewana3_0332at 366.769 kb on + strand, within Shewana3_0332at 366.808 kb on + strand, within Shewana3_0332at 366.808 kb on + strand, within Shewana3_0332at 366.813 kb on - strand, within Shewana3_0332at 366.846 kb on - strand, within Shewana3_0332at 366.927 kb on + strand, within Shewana3_0332at 366.957 kb on - strand, within Shewana3_0332at 367.029 kb on - strand, within Shewana3_0332at 367.044 kb on + strand, within Shewana3_0332at 367.049 kb on - strand, within Shewana3_0332at 367.049 kb on - strand, within Shewana3_0332at 367.049 kb on - strand, within Shewana3_0332at 367.142 kb on - strand, within Shewana3_0332at 367.207 kb on - strand, within Shewana3_0332at 367.239 kb on + strand, within Shewana3_0332at 367.246 kb on + strand, within Shewana3_0332at 367.402 kb on + strand, within Shewana3_0332at 367.531 kb on - strand, within Shewana3_0332at 367.531 kb on - strand, within Shewana3_0332at 367.537 kb on + strand, within Shewana3_0332at 367.684 kb on - strand, within Shewana3_0332at 367.821 kb on + strand, within Shewana3_0332at 367.843 kb on + strand, within Shewana3_0332at 367.851 kb on - strand, within Shewana3_0332at 367.875 kb on - strand, within Shewana3_0332at 367.912 kb on + strand, within Shewana3_0332at 367.997 kb on - strand, within Shewana3_0332at 368.139 kb on - strand, within Shewana3_0332at 368.192 kb on + strand, within Shewana3_0332at 368.192 kb on + strand, within Shewana3_0332at 368.200 kb on - strand, within Shewana3_0332at 368.361 kb on - strand, within Shewana3_0332at 368.414 kb on + strand, within Shewana3_0332at 368.433 kb on + strand, within Shewana3_0332at 368.487 kb on - strand, within Shewana3_0332at 368.570 kb on + strand, within Shewana3_0332at 368.595 kb on + strand, within Shewana3_0332at 368.684 kb on + strand, within Shewana3_0332at 368.737 kb on - strand, within Shewana3_0332at 368.817 kb on + strandat 368.893 kb on - strandat 369.085 kb on - strandat 369.140 kb on - strand, within Shewana3_0333at 369.142 kb on + strand, within Shewana3_0333at 369.147 kb on + strand, within Shewana3_0333at 369.147 kb on + strand, within Shewana3_0333at 369.150 kb on - strand, within Shewana3_0333at 369.155 kb on - strand, within Shewana3_0333at 369.155 kb on - strand, within Shewana3_0333at 369.155 kb on - strand, within Shewana3_0333at 369.155 kb on - strand, within Shewana3_0333at 369.288 kb on - strand, within Shewana3_0333at 369.381 kb on - strand, within Shewana3_0333at 369.502 kb on - strand, within Shewana3_0333at 369.561 kb on - strand, within Shewana3_0333at 369.573 kb on + strand, within Shewana3_0333at 369.693 kb on - strand, within Shewana3_0333at 369.693 kb on - strand, within Shewana3_0333at 369.752 kb on - strand, within Shewana3_0333at 369.757 kb on + strand, within Shewana3_0333at 369.765 kb on + strandat 369.765 kb on + strandat 369.951 kb on + strand, within Shewana3_0334at 369.954 kb on - strand, within Shewana3_0334at 369.954 kb on - strand, within Shewana3_0334at 369.960 kb on - strand, within Shewana3_0334

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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365,611 + Shewana3_0331 0.34 +0.4
365,629 + Shewana3_0331 0.36 +0.7
365,645 + Shewana3_0331 0.37 -0.2
365,663 - Shewana3_0331 0.38 -0.4
365,799 - Shewana3_0331 0.49 -0.0
365,814 + Shewana3_0331 0.50 -0.4
365,878 + Shewana3_0331 0.55 +2.7
366,017 + Shewana3_0331 0.65 -0.9
366,017 + Shewana3_0331 0.65 +0.3
366,025 - Shewana3_0331 0.66 -0.4
366,150 + Shewana3_0331 0.75 -0.2
366,193 - Shewana3_0331 0.79 +1.2
366,449 - -0.3
366,561 + -0.6
366,612 + +0.0
366,627 + +0.5
366,628 + +0.3
366,656 + +0.5
366,666 - +1.1
366,769 + Shewana3_0332 0.12 +0.3
366,769 + Shewana3_0332 0.12 +0.2
366,808 + Shewana3_0332 0.13 -0.6
366,808 + Shewana3_0332 0.13 -0.1
366,813 - Shewana3_0332 0.14 +0.6
366,846 - Shewana3_0332 0.15 -0.2
366,927 + Shewana3_0332 0.18 -0.1
366,957 - Shewana3_0332 0.19 +0.2
367,029 - Shewana3_0332 0.22 +0.6
367,044 + Shewana3_0332 0.23 +0.5
367,049 - Shewana3_0332 0.23 -0.3
367,049 - Shewana3_0332 0.23 -0.5
367,049 - Shewana3_0332 0.23 +0.6
367,142 - Shewana3_0332 0.27 -1.1
367,207 - Shewana3_0332 0.29 +0.1
367,239 + Shewana3_0332 0.30 +1.0
367,246 + Shewana3_0332 0.31 -0.1
367,402 + Shewana3_0332 0.37 -0.0
367,531 - Shewana3_0332 0.42 -0.1
367,531 - Shewana3_0332 0.42 -0.1
367,537 + Shewana3_0332 0.42 +0.2
367,684 - Shewana3_0332 0.48 -1.0
367,821 + Shewana3_0332 0.54 +0.5
367,843 + Shewana3_0332 0.54 -0.1
367,851 - Shewana3_0332 0.55 +0.3
367,875 - Shewana3_0332 0.56 +0.1
367,912 + Shewana3_0332 0.57 -0.1
367,997 - Shewana3_0332 0.61 -0.3
368,139 - Shewana3_0332 0.66 -0.1
368,192 + Shewana3_0332 0.68 -1.6
368,192 + Shewana3_0332 0.68 +0.4
368,200 - Shewana3_0332 0.69 +0.1
368,361 - Shewana3_0332 0.75 +0.0
368,414 + Shewana3_0332 0.77 -0.9
368,433 + Shewana3_0332 0.78 -0.3
368,487 - Shewana3_0332 0.80 -0.1
368,570 + Shewana3_0332 0.83 -0.8
368,595 + Shewana3_0332 0.84 +0.2
368,684 + Shewana3_0332 0.88 -0.4
368,737 - Shewana3_0332 0.90 -0.8
368,817 + -0.2
368,893 - -0.4
369,085 - -0.4
369,140 - Shewana3_0333 0.16 +1.8
369,142 + Shewana3_0333 0.17 -0.5
369,147 + Shewana3_0333 0.17 -0.1
369,147 + Shewana3_0333 0.17 -0.1
369,150 - Shewana3_0333 0.18 +0.1
369,155 - Shewana3_0333 0.18 -0.3
369,155 - Shewana3_0333 0.18 -0.7
369,155 - Shewana3_0333 0.18 -0.3
369,155 - Shewana3_0333 0.18 -0.4
369,288 - Shewana3_0333 0.34 +0.3
369,381 - Shewana3_0333 0.45 -0.3
369,502 - Shewana3_0333 0.59 +0.1
369,561 - Shewana3_0333 0.66 +0.5
369,573 + Shewana3_0333 0.68 +0.5
369,693 - Shewana3_0333 0.82 +0.6
369,693 - Shewana3_0333 0.82 +0.5
369,752 - Shewana3_0333 0.89 +0.4
369,757 + Shewana3_0333 0.90 +0.4
369,765 + +0.5
369,765 + +0.6
369,951 + Shewana3_0334 0.26 +2.4
369,954 - Shewana3_0334 0.26 -0.6
369,954 - Shewana3_0334 0.26 +0.3
369,960 - Shewana3_0334 0.28 +0.5

Or see this region's nucleotide sequence