Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0264 and Shewana3_0265 are separated by 113 nucleotides Shewana3_0265 and Shewana3_0266 are separated by 299 nucleotides
Shewana3_0264: Shewana3_0264 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 295,103 to 297,058
_0264
Shewana3_0265: Shewana3_0265 - hypothetical protein (RefSeq), at 297,172 to 299,271
_0265
Shewana3_0266: Shewana3_0266 - 2OG-Fe(II) oxygenase (RefSeq), at 299,571 to 300,554
_0266
Position (kb) 297
298
299
300 Strain fitness (log2 ratio) -2
-1
0
1 at 296.248 kb on + strand, within Shewana3_0264 at 296.364 kb on - strand, within Shewana3_0264 at 296.367 kb on + strand, within Shewana3_0264 at 296.418 kb on + strand, within Shewana3_0264 at 296.688 kb on + strand, within Shewana3_0264 at 296.730 kb on + strand, within Shewana3_0264 at 296.769 kb on - strand, within Shewana3_0264 at 296.788 kb on + strand, within Shewana3_0264 at 296.788 kb on + strand, within Shewana3_0264 at 296.857 kb on + strand, within Shewana3_0264 at 296.858 kb on + strand, within Shewana3_0264 at 296.924 kb on + strand at 296.924 kb on + strand at 297.013 kb on - strand at 297.052 kb on + strand at 297.369 kb on - strand at 297.380 kb on + strand at 297.380 kb on + strand at 297.388 kb on - strand, within Shewana3_0265 at 297.388 kb on - strand, within Shewana3_0265 at 297.453 kb on - strand, within Shewana3_0265 at 297.482 kb on + strand, within Shewana3_0265 at 297.482 kb on - strand, within Shewana3_0265 at 297.511 kb on - strand, within Shewana3_0265 at 297.628 kb on + strand, within Shewana3_0265 at 297.637 kb on - strand, within Shewana3_0265 at 297.659 kb on + strand, within Shewana3_0265 at 297.723 kb on - strand, within Shewana3_0265 at 297.726 kb on + strand, within Shewana3_0265 at 297.774 kb on - strand, within Shewana3_0265 at 297.847 kb on - strand, within Shewana3_0265 at 297.901 kb on - strand, within Shewana3_0265 at 297.903 kb on + strand, within Shewana3_0265 at 297.911 kb on - strand, within Shewana3_0265 at 297.921 kb on + strand, within Shewana3_0265 at 298.045 kb on - strand, within Shewana3_0265 at 298.308 kb on + strand, within Shewana3_0265 at 298.358 kb on + strand, within Shewana3_0265 at 298.489 kb on + strand, within Shewana3_0265 at 298.584 kb on - strand, within Shewana3_0265 at 298.801 kb on - strand, within Shewana3_0265 at 298.933 kb on - strand, within Shewana3_0265 at 298.967 kb on - strand, within Shewana3_0265 at 299.008 kb on + strand, within Shewana3_0265 at 299.126 kb on + strand at 299.134 kb on - strand at 299.188 kb on + strand at 299.191 kb on - strand at 299.221 kb on + strand at 299.296 kb on - strand at 299.530 kb on - strand at 299.856 kb on - strand, within Shewana3_0266 at 299.883 kb on - strand, within Shewana3_0266 at 300.040 kb on + strand, within Shewana3_0266 at 300.040 kb on + strand, within Shewana3_0266 at 300.057 kb on + strand, within Shewana3_0266 at 300.081 kb on + strand, within Shewana3_0266 at 300.135 kb on + strand, within Shewana3_0266 at 300.148 kb on - strand, within Shewana3_0266 at 300.223 kb on - strand, within Shewana3_0266
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 296,248 + Shewana3_0264 0.59 -0.7 296,364 - Shewana3_0264 0.64 +0.1 296,367 + Shewana3_0264 0.65 +0.3 296,418 + Shewana3_0264 0.67 -0.5 296,688 + Shewana3_0264 0.81 +1.0 296,730 + Shewana3_0264 0.83 -0.9 296,769 - Shewana3_0264 0.85 +0.5 296,788 + Shewana3_0264 0.86 -0.1 296,788 + Shewana3_0264 0.86 +0.3 296,857 + Shewana3_0264 0.90 -0.2 296,858 + Shewana3_0264 0.90 +0.2 296,924 + -0.1 296,924 + +0.2 297,013 - -0.0 297,052 + -0.2 297,369 - +0.0 297,380 + -0.4 297,380 + -0.3 297,388 - Shewana3_0265 0.10 +0.3 297,388 - Shewana3_0265 0.10 -0.0 297,453 - Shewana3_0265 0.13 -0.2 297,482 + Shewana3_0265 0.15 -0.1 297,482 - Shewana3_0265 0.15 -0.6 297,511 - Shewana3_0265 0.16 +0.1 297,628 + Shewana3_0265 0.22 +0.5 297,637 - Shewana3_0265 0.22 -1.0 297,659 + Shewana3_0265 0.23 -0.5 297,723 - Shewana3_0265 0.26 +0.3 297,726 + Shewana3_0265 0.26 +0.2 297,774 - Shewana3_0265 0.29 -0.3 297,847 - Shewana3_0265 0.32 -1.8 297,901 - Shewana3_0265 0.35 -0.4 297,903 + Shewana3_0265 0.35 +0.7 297,911 - Shewana3_0265 0.35 -0.3 297,921 + Shewana3_0265 0.36 -0.7 298,045 - Shewana3_0265 0.42 +0.5 298,308 + Shewana3_0265 0.54 -0.0 298,358 + Shewana3_0265 0.56 -1.0 298,489 + Shewana3_0265 0.63 +0.3 298,584 - Shewana3_0265 0.67 +0.3 298,801 - Shewana3_0265 0.78 -0.9 298,933 - Shewana3_0265 0.84 -1.2 298,967 - Shewana3_0265 0.85 +1.1 299,008 + Shewana3_0265 0.87 +0.1 299,126 + +0.3 299,134 - -0.1 299,188 + +0.2 299,191 - -1.2 299,221 + +0.6 299,296 - -0.3 299,530 - -0.5 299,856 - Shewana3_0266 0.29 +0.2 299,883 - Shewana3_0266 0.32 -0.4 300,040 + Shewana3_0266 0.48 +0.5 300,040 + Shewana3_0266 0.48 -0.6 300,057 + Shewana3_0266 0.49 -0.2 300,081 + Shewana3_0266 0.52 -0.3 300,135 + Shewana3_0266 0.57 -1.3 300,148 - Shewana3_0266 0.59 -0.5 300,223 - Shewana3_0266 0.66 -0.3
Or see this region's nucleotide sequence