Experiment: L-Malic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_728 and HP15_729 are separated by 54 nucleotides HP15_729 and HP15_730 are separated by 82 nucleotides HP15_730 and HP15_731 are separated by 137 nucleotides
HP15_728: HP15_728 - PhoH family protein, at 738,805 to 740,160
_728
HP15_729: HP15_729 - signal transduction protein with CBS domains, at 740,215 to 740,706
_729
HP15_730: HP15_730 - protein containing StAR-related lipid-transfer (START) domain, at 740,789 to 741,523
_730
HP15_731: HP15_731 - conserved hypothetical protein, at 741,661 to 742,668
_731
Position (kb) 740
741 Strain fitness (log2 ratio) -2
-1
0
1 at 739.223 kb on + strand, within HP15_728 at 739.243 kb on + strand, within HP15_728 at 739.358 kb on - strand, within HP15_728 at 739.361 kb on + strand, within HP15_728 at 739.482 kb on - strand, within HP15_728 at 739.676 kb on + strand, within HP15_728 at 739.818 kb on - strand, within HP15_728 at 739.902 kb on - strand, within HP15_728 at 739.920 kb on - strand, within HP15_728 at 739.973 kb on - strand, within HP15_728 at 740.170 kb on + strand at 740.188 kb on - strand at 740.188 kb on - strand at 740.228 kb on + strand at 740.484 kb on + strand, within HP15_729 at 740.500 kb on - strand, within HP15_729 at 740.517 kb on + strand, within HP15_729 at 740.721 kb on - strand at 740.769 kb on + strand at 740.769 kb on + strand at 740.769 kb on + strand at 740.775 kb on - strand at 740.887 kb on - strand, within HP15_730 at 740.922 kb on + strand, within HP15_730 at 740.951 kb on + strand, within HP15_730 at 740.977 kb on - strand, within HP15_730 at 741.008 kb on - strand, within HP15_730 at 741.090 kb on - strand, within HP15_730 at 741.097 kb on + strand, within HP15_730 at 741.241 kb on - strand, within HP15_730 at 741.323 kb on - strand, within HP15_730 at 741.323 kb on - strand, within HP15_730 at 741.459 kb on + strand at 741.472 kb on - strand at 741.513 kb on - strand at 741.546 kb on - strand at 741.691 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic remove 739,223 + HP15_728 0.31 -0.6 739,243 + HP15_728 0.32 +0.4 739,358 - HP15_728 0.41 +0.2 739,361 + HP15_728 0.41 +0.2 739,482 - HP15_728 0.50 -0.3 739,676 + HP15_728 0.64 +0.1 739,818 - HP15_728 0.75 +0.9 739,902 - HP15_728 0.81 -0.9 739,920 - HP15_728 0.82 +0.4 739,973 - HP15_728 0.86 -0.3 740,170 + +0.2 740,188 - +0.7 740,188 - +0.6 740,228 + -1.5 740,484 + HP15_729 0.55 +0.7 740,500 - HP15_729 0.58 -0.1 740,517 + HP15_729 0.61 +0.4 740,721 - -0.0 740,769 + -0.5 740,769 + +0.1 740,769 + +0.0 740,775 - +0.9 740,887 - HP15_730 0.13 +0.7 740,922 + HP15_730 0.18 +1.2 740,951 + HP15_730 0.22 +0.5 740,977 - HP15_730 0.26 +0.1 741,008 - HP15_730 0.30 -0.0 741,090 - HP15_730 0.41 -0.3 741,097 + HP15_730 0.42 -0.4 741,241 - HP15_730 0.61 +0.1 741,323 - HP15_730 0.73 +0.1 741,323 - HP15_730 0.73 +0.8 741,459 + -0.4 741,472 - +0.7 741,513 - +0.1 741,546 - -1.8 741,691 + +0.2
Or see this region's nucleotide sequence