Strain Fitness in Marinobacter adhaerens HP15 around HP15_2922

Experiment: L-Malic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2920 and HP15_2921 are separated by 68 nucleotidesHP15_2921 and HP15_2922 are separated by 62 nucleotidesHP15_2922 and HP15_2923 are separated by 590 nucleotidesHP15_2923 and HP15_2924 are separated by 259 nucleotides HP15_2920: HP15_2920 - amino acid ABC transporter, ATP-binding protein, at 3,059,393 to 3,060,139 _2920 HP15_2921: HP15_2921 - prophage CP4-57 regulatory, at 3,060,208 to 3,060,630 _2921 HP15_2922: HP15_2922 - hypothetical protein, at 3,060,693 to 3,060,977 _2922 HP15_2923: HP15_2923 - hypothetical protein, at 3,061,568 to 3,061,693 _2923 HP15_2924: HP15_2924 - conserved hypothetical protein, at 3,061,953 to 3,063,536 _2924 Position (kb) 3060 3061Strain fitness (log2 ratio) -1 0 1 2at 3059.722 kb on + strand, within HP15_2920at 3059.752 kb on + strand, within HP15_2920at 3059.778 kb on + strand, within HP15_2920at 3059.786 kb on - strand, within HP15_2920at 3059.831 kb on + strand, within HP15_2920at 3059.831 kb on + strand, within HP15_2920at 3059.837 kb on - strand, within HP15_2920at 3059.865 kb on + strand, within HP15_2920at 3059.901 kb on + strand, within HP15_2920at 3059.941 kb on - strand, within HP15_2920at 3059.956 kb on + strand, within HP15_2920at 3060.006 kb on + strand, within HP15_2920at 3060.014 kb on - strand, within HP15_2920at 3060.053 kb on - strand, within HP15_2920at 3060.133 kb on + strandat 3060.223 kb on - strandat 3060.276 kb on + strand, within HP15_2921at 3060.354 kb on - strand, within HP15_2921at 3060.490 kb on + strand, within HP15_2921at 3060.497 kb on - strand, within HP15_2921at 3060.565 kb on - strand, within HP15_2921at 3060.584 kb on - strand, within HP15_2921at 3060.682 kb on - strandat 3060.806 kb on + strand, within HP15_2922at 3060.943 kb on - strand, within HP15_2922at 3060.969 kb on - strandat 3061.048 kb on + strandat 3061.171 kb on - strandat 3061.229 kb on + strandat 3061.476 kb on - strandat 3061.507 kb on - strandat 3061.553 kb on - strandat 3061.569 kb on + strandat 3061.750 kb on + strandat 3061.870 kb on - strandat 3061.922 kb on - strandat 3061.968 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic
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3,059,722 + HP15_2920 0.44 -1.2
3,059,752 + HP15_2920 0.48 -0.8
3,059,778 + HP15_2920 0.52 +1.0
3,059,786 - HP15_2920 0.53 -0.6
3,059,831 + HP15_2920 0.59 -0.7
3,059,831 + HP15_2920 0.59 -0.4
3,059,837 - HP15_2920 0.59 -0.2
3,059,865 + HP15_2920 0.63 +0.0
3,059,901 + HP15_2920 0.68 -0.0
3,059,941 - HP15_2920 0.73 +0.5
3,059,956 + HP15_2920 0.75 +0.6
3,060,006 + HP15_2920 0.82 +2.0
3,060,014 - HP15_2920 0.83 +0.1
3,060,053 - HP15_2920 0.88 +0.8
3,060,133 + +0.4
3,060,223 - +1.2
3,060,276 + HP15_2921 0.16 -0.3
3,060,354 - HP15_2921 0.35 +0.2
3,060,490 + HP15_2921 0.67 -1.4
3,060,497 - HP15_2921 0.68 +0.0
3,060,565 - HP15_2921 0.84 +1.7
3,060,584 - HP15_2921 0.89 +0.6
3,060,682 - -0.4
3,060,806 + HP15_2922 0.40 +1.1
3,060,943 - HP15_2922 0.88 +0.6
3,060,969 - -0.3
3,061,048 + -0.1
3,061,171 - +0.9
3,061,229 + -0.2
3,061,476 - -1.7
3,061,507 - -0.1
3,061,553 - +0.3
3,061,569 + -0.2
3,061,750 + -0.2
3,061,870 - +0.1
3,061,922 - -0.2
3,061,968 - +0.5

Or see this region's nucleotide sequence