Experiment: L-Malic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2920 and HP15_2921 are separated by 68 nucleotides HP15_2921 and HP15_2922 are separated by 62 nucleotides HP15_2922 and HP15_2923 are separated by 590 nucleotides HP15_2923 and HP15_2924 are separated by 259 nucleotides
HP15_2920: HP15_2920 - amino acid ABC transporter, ATP-binding protein, at 3,059,393 to 3,060,139
_2920
HP15_2921: HP15_2921 - prophage CP4-57 regulatory, at 3,060,208 to 3,060,630
_2921
HP15_2922: HP15_2922 - hypothetical protein, at 3,060,693 to 3,060,977
_2922
HP15_2923: HP15_2923 - hypothetical protein, at 3,061,568 to 3,061,693
_2923
HP15_2924: HP15_2924 - conserved hypothetical protein, at 3,061,953 to 3,063,536
_2924
Position (kb)
3060
3061 Strain fitness (log2 ratio)
-1
0
1
2 at 3059.722 kb on + strand, within HP15_2920 at 3059.752 kb on + strand, within HP15_2920 at 3059.778 kb on + strand, within HP15_2920 at 3059.786 kb on - strand, within HP15_2920 at 3059.831 kb on + strand, within HP15_2920 at 3059.831 kb on + strand, within HP15_2920 at 3059.837 kb on - strand, within HP15_2920 at 3059.865 kb on + strand, within HP15_2920 at 3059.901 kb on + strand, within HP15_2920 at 3059.941 kb on - strand, within HP15_2920 at 3059.956 kb on + strand, within HP15_2920 at 3060.006 kb on + strand, within HP15_2920 at 3060.014 kb on - strand, within HP15_2920 at 3060.053 kb on - strand, within HP15_2920 at 3060.133 kb on + strand at 3060.223 kb on - strand at 3060.276 kb on + strand, within HP15_2921 at 3060.354 kb on - strand, within HP15_2921 at 3060.490 kb on + strand, within HP15_2921 at 3060.497 kb on - strand, within HP15_2921 at 3060.565 kb on - strand, within HP15_2921 at 3060.584 kb on - strand, within HP15_2921 at 3060.682 kb on - strand at 3060.806 kb on + strand, within HP15_2922 at 3060.943 kb on - strand, within HP15_2922 at 3060.969 kb on - strand at 3061.048 kb on + strand at 3061.171 kb on - strand at 3061.229 kb on + strand at 3061.476 kb on - strand at 3061.507 kb on - strand at 3061.553 kb on - strand at 3061.569 kb on + strand at 3061.750 kb on + strand at 3061.870 kb on - strand at 3061.922 kb on - strand at 3061.968 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic remove 3,059,722 + HP15_2920 0.44 -1.2 3,059,752 + HP15_2920 0.48 -0.8 3,059,778 + HP15_2920 0.52 +1.0 3,059,786 - HP15_2920 0.53 -0.6 3,059,831 + HP15_2920 0.59 -0.7 3,059,831 + HP15_2920 0.59 -0.4 3,059,837 - HP15_2920 0.59 -0.2 3,059,865 + HP15_2920 0.63 +0.0 3,059,901 + HP15_2920 0.68 -0.0 3,059,941 - HP15_2920 0.73 +0.5 3,059,956 + HP15_2920 0.75 +0.6 3,060,006 + HP15_2920 0.82 +2.0 3,060,014 - HP15_2920 0.83 +0.1 3,060,053 - HP15_2920 0.88 +0.8 3,060,133 + +0.4 3,060,223 - +1.2 3,060,276 + HP15_2921 0.16 -0.3 3,060,354 - HP15_2921 0.35 +0.2 3,060,490 + HP15_2921 0.67 -1.4 3,060,497 - HP15_2921 0.68 +0.0 3,060,565 - HP15_2921 0.84 +1.7 3,060,584 - HP15_2921 0.89 +0.6 3,060,682 - -0.4 3,060,806 + HP15_2922 0.40 +1.1 3,060,943 - HP15_2922 0.88 +0.6 3,060,969 - -0.3 3,061,048 + -0.1 3,061,171 - +0.9 3,061,229 + -0.2 3,061,476 - -1.7 3,061,507 - -0.1 3,061,553 - +0.3 3,061,569 + -0.2 3,061,750 + -0.2 3,061,870 - +0.1 3,061,922 - -0.2 3,061,968 - +0.5
Or see this region's nucleotide sequence