Strain Fitness in Marinobacter adhaerens HP15 around HP15_1500

Experiment: L-Malic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1499 and HP15_1500 are separated by 26 nucleotidesHP15_1500 and HP15_1501 are separated by 30 nucleotidesHP15_1501 and HP15_1502 are separated by 41 nucleotidesHP15_1502 and HP15_tRNA28 are separated by 51 nucleotidesHP15_tRNA28 and HP15_1503 are separated by 115 nucleotides HP15_1499: HP15_1499 - acetate/propionate kinase, at 1,575,635 to 1,576,831 _1499 HP15_1500: HP15_1500 - sensory box/GGDEF family protein, at 1,576,858 to 1,579,287 _1500 HP15_1501: HP15_1501 - hypothetical protein, at 1,579,318 to 1,579,473 _1501 HP15_1502: HP15_1502 - conserved hypothetical protein, at 1,579,515 to 1,579,661 _1502 HP15_tRNA28: HP15_tRNA28 - tRNA-Glu, at 1,579,713 to 1,579,788 _tRNA28 HP15_1503: HP15_1503 - nucleoside-diphosphate sugar epimerase, at 1,579,904 to 1,580,830 _1503 Position (kb) 1576 1577 1578 1579 1580Strain fitness (log2 ratio) -1 0 1at 1576.029 kb on - strand, within HP15_1499at 1576.110 kb on - strand, within HP15_1499at 1576.110 kb on - strand, within HP15_1499at 1576.264 kb on + strand, within HP15_1499at 1576.377 kb on - strand, within HP15_1499at 1576.438 kb on + strand, within HP15_1499at 1576.478 kb on + strand, within HP15_1499at 1576.492 kb on + strand, within HP15_1499at 1576.574 kb on + strand, within HP15_1499at 1576.594 kb on - strand, within HP15_1499at 1577.007 kb on + strandat 1577.054 kb on + strandat 1577.064 kb on + strandat 1577.144 kb on - strand, within HP15_1500at 1577.286 kb on + strand, within HP15_1500at 1577.304 kb on - strand, within HP15_1500at 1577.443 kb on - strand, within HP15_1500at 1577.529 kb on - strand, within HP15_1500at 1577.529 kb on - strand, within HP15_1500at 1577.603 kb on - strand, within HP15_1500at 1577.704 kb on - strand, within HP15_1500at 1577.870 kb on - strand, within HP15_1500at 1577.870 kb on - strand, within HP15_1500at 1577.872 kb on + strand, within HP15_1500at 1577.885 kb on - strand, within HP15_1500at 1578.081 kb on + strand, within HP15_1500at 1578.105 kb on - strand, within HP15_1500at 1578.314 kb on - strand, within HP15_1500at 1578.382 kb on + strand, within HP15_1500at 1578.574 kb on + strand, within HP15_1500at 1578.624 kb on - strand, within HP15_1500at 1578.846 kb on + strand, within HP15_1500at 1578.912 kb on + strand, within HP15_1500at 1579.052 kb on + strandat 1579.071 kb on + strandat 1579.071 kb on + strandat 1579.078 kb on + strandat 1579.079 kb on - strandat 1579.155 kb on - strandat 1579.270 kb on + strandat 1579.432 kb on + strand, within HP15_1501at 1579.446 kb on - strand, within HP15_1501at 1579.536 kb on + strand, within HP15_1502at 1579.952 kb on - strandat 1579.954 kb on + strandat 1580.096 kb on + strand, within HP15_1503at 1580.096 kb on + strand, within HP15_1503at 1580.175 kb on - strand, within HP15_1503at 1580.175 kb on - strand, within HP15_1503at 1580.175 kb on - strand, within HP15_1503at 1580.175 kb on - strand, within HP15_1503at 1580.210 kb on + strand, within HP15_1503at 1580.278 kb on + strand, within HP15_1503

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic
remove
1,576,029 - HP15_1499 0.33 +0.6
1,576,110 - HP15_1499 0.40 +0.6
1,576,110 - HP15_1499 0.40 -0.2
1,576,264 + HP15_1499 0.53 +0.5
1,576,377 - HP15_1499 0.62 -0.1
1,576,438 + HP15_1499 0.67 -0.4
1,576,478 + HP15_1499 0.70 -0.0
1,576,492 + HP15_1499 0.72 +0.3
1,576,574 + HP15_1499 0.78 +0.1
1,576,594 - HP15_1499 0.80 -0.3
1,577,007 + +1.1
1,577,054 + +0.7
1,577,064 + -1.0
1,577,144 - HP15_1500 0.12 +0.4
1,577,286 + HP15_1500 0.18 +0.1
1,577,304 - HP15_1500 0.18 +0.5
1,577,443 - HP15_1500 0.24 +1.0
1,577,529 - HP15_1500 0.28 +0.9
1,577,529 - HP15_1500 0.28 +0.0
1,577,603 - HP15_1500 0.31 +0.2
1,577,704 - HP15_1500 0.35 +0.8
1,577,870 - HP15_1500 0.42 +0.2
1,577,870 - HP15_1500 0.42 +0.0
1,577,872 + HP15_1500 0.42 +1.2
1,577,885 - HP15_1500 0.42 +1.6
1,578,081 + HP15_1500 0.50 +0.1
1,578,105 - HP15_1500 0.51 +0.5
1,578,314 - HP15_1500 0.60 -0.1
1,578,382 + HP15_1500 0.63 +0.9
1,578,574 + HP15_1500 0.71 +0.1
1,578,624 - HP15_1500 0.73 +0.2
1,578,846 + HP15_1500 0.82 +0.1
1,578,912 + HP15_1500 0.85 +0.0
1,579,052 + +0.6
1,579,071 + +0.9
1,579,071 + +1.0
1,579,078 + +0.8
1,579,079 - -0.0
1,579,155 - +0.9
1,579,270 + +0.5
1,579,432 + HP15_1501 0.73 -0.5
1,579,446 - HP15_1501 0.82 +0.8
1,579,536 + HP15_1502 0.14 +0.2
1,579,952 - -1.0
1,579,954 + +0.6
1,580,096 + HP15_1503 0.21 -0.2
1,580,096 + HP15_1503 0.21 -1.6
1,580,175 - HP15_1503 0.29 -0.6
1,580,175 - HP15_1503 0.29 +0.2
1,580,175 - HP15_1503 0.29 -0.2
1,580,175 - HP15_1503 0.29 -1.4
1,580,210 + HP15_1503 0.33 +0.1
1,580,278 + HP15_1503 0.40 -0.2

Or see this region's nucleotide sequence