Experiment: rich media with sodium chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3086 and Dsui_3087 overlap by 1 nucleotides Dsui_3087 and Dsui_3088 are separated by 110 nucleotides Dsui_3088 and Dsui_3089 are separated by 48 nucleotides
Dsui_3086: Dsui_3086 - hypothetical protein, at 3,304,920 to 3,306,221
_3086
Dsui_3087: Dsui_3087 - peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family, at 3,306,221 to 3,306,796
_3087
Dsui_3088: Dsui_3088 - peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family, at 3,306,907 to 3,307,398
_3088
Dsui_3089: Dsui_3089 - UDP-2,3-diacylglucosamine hydrolase, at 3,307,447 to 3,308,205
_3089
Position (kb)
3306
3307
3308 Strain fitness (log2 ratio)
-1
0
1
2 at 3305.945 kb on - strand at 3305.945 kb on - strand, within Dsui_3086 at 3306.038 kb on + strand, within Dsui_3086 at 3306.112 kb on + strand at 3306.112 kb on + strand at 3306.120 kb on - strand at 3306.349 kb on + strand, within Dsui_3087 at 3306.368 kb on + strand, within Dsui_3087 at 3306.556 kb on - strand, within Dsui_3087 at 3306.556 kb on - strand, within Dsui_3087 at 3306.557 kb on - strand, within Dsui_3087 at 3306.630 kb on - strand at 3306.646 kb on + strand, within Dsui_3087 at 3306.646 kb on + strand, within Dsui_3087 at 3306.650 kb on - strand, within Dsui_3087 at 3306.654 kb on - strand at 3306.654 kb on - strand, within Dsui_3087 at 3306.654 kb on - strand, within Dsui_3087 at 3306.768 kb on + strand at 3306.946 kb on + strand at 3307.192 kb on + strand, within Dsui_3088 at 3307.192 kb on + strand, within Dsui_3088 at 3307.311 kb on + strand, within Dsui_3088 at 3307.311 kb on + strand, within Dsui_3088 at 3307.340 kb on + strand, within Dsui_3088 at 3308.233 kb on + strand at 3308.247 kb on + strand at 3308.249 kb on - strand at 3308.297 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM remove 3,305,945 - +0.9 3,305,945 - Dsui_3086 0.79 +1.0 3,306,038 + Dsui_3086 0.86 -0.1 3,306,112 + -0.0 3,306,112 + +0.2 3,306,120 - -1.1 3,306,349 + Dsui_3087 0.22 -0.0 3,306,368 + Dsui_3087 0.26 +0.4 3,306,556 - Dsui_3087 0.58 -0.0 3,306,556 - Dsui_3087 0.58 +0.2 3,306,557 - Dsui_3087 0.58 +0.5 3,306,630 - -0.4 3,306,646 + Dsui_3087 0.74 +0.4 3,306,646 + Dsui_3087 0.74 +0.3 3,306,650 - Dsui_3087 0.74 +1.9 3,306,654 - -0.3 3,306,654 - Dsui_3087 0.75 +1.3 3,306,654 - Dsui_3087 0.75 +1.3 3,306,768 + +0.2 3,306,946 + -0.0 3,307,192 + Dsui_3088 0.58 +0.3 3,307,192 + Dsui_3088 0.58 -0.9 3,307,311 + Dsui_3088 0.82 -0.8 3,307,311 + Dsui_3088 0.82 -0.1 3,307,340 + Dsui_3088 0.88 -0.0 3,308,233 + +0.6 3,308,247 + +0.4 3,308,249 - -0.0 3,308,297 + -0.2
Or see this region's nucleotide sequence