Strain Fitness in Dechlorosoma suillum PS around Dsui_3018

Experiment: rich media with sodium chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3015 and Dsui_3016 are separated by 59 nucleotidesDsui_3016 and Dsui_3017 are separated by 159 nucleotidesDsui_3017 and Dsui_3018 are separated by 36 nucleotidesDsui_3018 and Dsui_3019 are separated by 9 nucleotidesDsui_3019 and Dsui_3020 are separated by 22 nucleotides Dsui_3015: Dsui_3015 - hypothetical protein, at 3,230,021 to 3,230,548 _3015 Dsui_3016: Dsui_3016 - hypothetical protein, at 3,230,608 to 3,230,928 _3016 Dsui_3017: Dsui_3017 - uncharacterized conserved small protein containing a coiled-coil domain, at 3,231,088 to 3,231,300 _3017 Dsui_3018: Dsui_3018 - OAH/OAS sulfhydrylase, at 3,231,337 to 3,232,638 _3018 Dsui_3019: Dsui_3019 - putative hydrolase or acyltransferase of alpha/beta superfamily, at 3,232,648 to 3,233,433 _3019 Dsui_3020: Dsui_3020 - Protein of unknown function (DUF3124), at 3,233,456 to 3,233,968 _3020 Position (kb) 3231 3232 3233Strain fitness (log2 ratio) -2 -1 0 1 2at 3230.400 kb on - strandat 3230.510 kb on - strandat 3230.664 kb on - strand, within Dsui_3016at 3230.664 kb on - strand, within Dsui_3016at 3230.670 kb on - strand, within Dsui_3016at 3230.759 kb on - strand, within Dsui_3016at 3230.769 kb on - strand, within Dsui_3016at 3230.872 kb on - strand, within Dsui_3016at 3230.952 kb on - strandat 3230.958 kb on + strandat 3230.966 kb on - strandat 3230.971 kb on - strandat 3230.971 kb on - strandat 3231.076 kb on + strandat 3231.104 kb on - strandat 3231.204 kb on + strand, within Dsui_3017at 3231.368 kb on + strandat 3231.432 kb on + strandat 3231.468 kb on + strand, within Dsui_3018at 3231.572 kb on + strand, within Dsui_3018at 3231.698 kb on + strand, within Dsui_3018at 3231.743 kb on + strand, within Dsui_3018at 3231.805 kb on + strand, within Dsui_3018at 3231.823 kb on - strand, within Dsui_3018at 3231.905 kb on + strand, within Dsui_3018at 3231.908 kb on - strandat 3231.913 kb on - strand, within Dsui_3018at 3231.913 kb on - strand, within Dsui_3018at 3231.913 kb on - strandat 3231.915 kb on + strand, within Dsui_3018at 3231.943 kb on - strandat 3231.954 kb on - strandat 3232.003 kb on + strand, within Dsui_3018at 3232.080 kb on - strandat 3232.218 kb on + strand, within Dsui_3018at 3232.380 kb on + strand, within Dsui_3018at 3232.433 kb on + strand, within Dsui_3018at 3232.505 kb on - strandat 3232.515 kb on + strandat 3232.759 kb on + strand, within Dsui_3019at 3233.019 kb on + strand, within Dsui_3019at 3233.027 kb on - strand, within Dsui_3019at 3233.040 kb on + strand, within Dsui_3019at 3233.048 kb on - strand, within Dsui_3019at 3233.048 kb on - strand, within Dsui_3019at 3233.216 kb on + strand, within Dsui_3019at 3233.239 kb on + strand, within Dsui_3019at 3233.427 kb on + strandat 3233.435 kb on - strandat 3233.435 kb on - strandat 3233.493 kb on - strandat 3233.596 kb on + strand, within Dsui_3020

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
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3,230,400 - +1.9
3,230,510 - -0.2
3,230,664 - Dsui_3016 0.17 -0.7
3,230,664 - Dsui_3016 0.17 -1.2
3,230,670 - Dsui_3016 0.19 -0.1
3,230,759 - Dsui_3016 0.47 +0.2
3,230,769 - Dsui_3016 0.50 -0.5
3,230,872 - Dsui_3016 0.82 -0.1
3,230,952 - +0.1
3,230,958 + +0.7
3,230,966 - -0.3
3,230,971 - +0.0
3,230,971 - +0.1
3,231,076 + -0.2
3,231,104 - +1.9
3,231,204 + Dsui_3017 0.54 -1.0
3,231,368 + -0.6
3,231,432 + -0.7
3,231,468 + Dsui_3018 0.10 -0.4
3,231,572 + Dsui_3018 0.18 -0.3
3,231,698 + Dsui_3018 0.28 -0.3
3,231,743 + Dsui_3018 0.31 -0.3
3,231,805 + Dsui_3018 0.36 +0.5
3,231,823 - Dsui_3018 0.37 -0.7
3,231,905 + Dsui_3018 0.44 -0.4
3,231,908 - -0.1
3,231,913 - Dsui_3018 0.44 -0.7
3,231,913 - Dsui_3018 0.44 -1.8
3,231,913 - -0.9
3,231,915 + Dsui_3018 0.44 +0.5
3,231,943 - -0.4
3,231,954 - -0.4
3,232,003 + Dsui_3018 0.51 +0.7
3,232,080 - +0.3
3,232,218 + Dsui_3018 0.68 -0.1
3,232,380 + Dsui_3018 0.80 -1.8
3,232,433 + Dsui_3018 0.84 -0.5
3,232,505 - +1.9
3,232,515 + -1.2
3,232,759 + Dsui_3019 0.14 -0.3
3,233,019 + Dsui_3019 0.47 -1.2
3,233,027 - Dsui_3019 0.48 +0.5
3,233,040 + Dsui_3019 0.50 -0.7
3,233,048 - Dsui_3019 0.51 -0.7
3,233,048 - Dsui_3019 0.51 -0.2
3,233,216 + Dsui_3019 0.72 -0.0
3,233,239 + Dsui_3019 0.75 -0.2
3,233,427 + +0.1
3,233,435 - -0.4
3,233,435 - -0.4
3,233,493 - -0.8
3,233,596 + Dsui_3020 0.27 +0.8

Or see this region's nucleotide sequence