Experiment: rich media with sodium chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3015 and Dsui_3016 are separated by 59 nucleotides Dsui_3016 and Dsui_3017 are separated by 159 nucleotides Dsui_3017 and Dsui_3018 are separated by 36 nucleotides Dsui_3018 and Dsui_3019 are separated by 9 nucleotides Dsui_3019 and Dsui_3020 are separated by 22 nucleotides
Dsui_3015: Dsui_3015 - hypothetical protein, at 3,230,021 to 3,230,548
_3015
Dsui_3016: Dsui_3016 - hypothetical protein, at 3,230,608 to 3,230,928
_3016
Dsui_3017: Dsui_3017 - uncharacterized conserved small protein containing a coiled-coil domain, at 3,231,088 to 3,231,300
_3017
Dsui_3018: Dsui_3018 - OAH/OAS sulfhydrylase, at 3,231,337 to 3,232,638
_3018
Dsui_3019: Dsui_3019 - putative hydrolase or acyltransferase of alpha/beta superfamily, at 3,232,648 to 3,233,433
_3019
Dsui_3020: Dsui_3020 - Protein of unknown function (DUF3124), at 3,233,456 to 3,233,968
_3020
Position (kb)
3231
3232
3233 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3230.400 kb on - strand at 3230.510 kb on - strand at 3230.664 kb on - strand, within Dsui_3016 at 3230.664 kb on - strand, within Dsui_3016 at 3230.670 kb on - strand, within Dsui_3016 at 3230.759 kb on - strand, within Dsui_3016 at 3230.769 kb on - strand, within Dsui_3016 at 3230.872 kb on - strand, within Dsui_3016 at 3230.952 kb on - strand at 3230.958 kb on + strand at 3230.966 kb on - strand at 3230.971 kb on - strand at 3230.971 kb on - strand at 3231.076 kb on + strand at 3231.104 kb on - strand at 3231.204 kb on + strand, within Dsui_3017 at 3231.368 kb on + strand at 3231.432 kb on + strand at 3231.468 kb on + strand, within Dsui_3018 at 3231.572 kb on + strand, within Dsui_3018 at 3231.698 kb on + strand, within Dsui_3018 at 3231.743 kb on + strand, within Dsui_3018 at 3231.805 kb on + strand, within Dsui_3018 at 3231.823 kb on - strand, within Dsui_3018 at 3231.905 kb on + strand, within Dsui_3018 at 3231.908 kb on - strand at 3231.913 kb on - strand, within Dsui_3018 at 3231.913 kb on - strand, within Dsui_3018 at 3231.913 kb on - strand at 3231.915 kb on + strand, within Dsui_3018 at 3231.943 kb on - strand at 3231.954 kb on - strand at 3232.003 kb on + strand, within Dsui_3018 at 3232.080 kb on - strand at 3232.218 kb on + strand, within Dsui_3018 at 3232.380 kb on + strand, within Dsui_3018 at 3232.433 kb on + strand, within Dsui_3018 at 3232.505 kb on - strand at 3232.515 kb on + strand at 3232.759 kb on + strand, within Dsui_3019 at 3233.019 kb on + strand, within Dsui_3019 at 3233.027 kb on - strand, within Dsui_3019 at 3233.040 kb on + strand, within Dsui_3019 at 3233.048 kb on - strand, within Dsui_3019 at 3233.048 kb on - strand, within Dsui_3019 at 3233.216 kb on + strand, within Dsui_3019 at 3233.239 kb on + strand, within Dsui_3019 at 3233.427 kb on + strand at 3233.435 kb on - strand at 3233.435 kb on - strand at 3233.493 kb on - strand at 3233.596 kb on + strand, within Dsui_3020
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM remove 3,230,400 - +1.9 3,230,510 - -0.2 3,230,664 - Dsui_3016 0.17 -0.7 3,230,664 - Dsui_3016 0.17 -1.2 3,230,670 - Dsui_3016 0.19 -0.1 3,230,759 - Dsui_3016 0.47 +0.2 3,230,769 - Dsui_3016 0.50 -0.5 3,230,872 - Dsui_3016 0.82 -0.1 3,230,952 - +0.1 3,230,958 + +0.7 3,230,966 - -0.3 3,230,971 - +0.0 3,230,971 - +0.1 3,231,076 + -0.2 3,231,104 - +1.9 3,231,204 + Dsui_3017 0.54 -1.0 3,231,368 + -0.6 3,231,432 + -0.7 3,231,468 + Dsui_3018 0.10 -0.4 3,231,572 + Dsui_3018 0.18 -0.3 3,231,698 + Dsui_3018 0.28 -0.3 3,231,743 + Dsui_3018 0.31 -0.3 3,231,805 + Dsui_3018 0.36 +0.5 3,231,823 - Dsui_3018 0.37 -0.7 3,231,905 + Dsui_3018 0.44 -0.4 3,231,908 - -0.1 3,231,913 - Dsui_3018 0.44 -0.7 3,231,913 - Dsui_3018 0.44 -1.8 3,231,913 - -0.9 3,231,915 + Dsui_3018 0.44 +0.5 3,231,943 - -0.4 3,231,954 - -0.4 3,232,003 + Dsui_3018 0.51 +0.7 3,232,080 - +0.3 3,232,218 + Dsui_3018 0.68 -0.1 3,232,380 + Dsui_3018 0.80 -1.8 3,232,433 + Dsui_3018 0.84 -0.5 3,232,505 - +1.9 3,232,515 + -1.2 3,232,759 + Dsui_3019 0.14 -0.3 3,233,019 + Dsui_3019 0.47 -1.2 3,233,027 - Dsui_3019 0.48 +0.5 3,233,040 + Dsui_3019 0.50 -0.7 3,233,048 - Dsui_3019 0.51 -0.7 3,233,048 - Dsui_3019 0.51 -0.2 3,233,216 + Dsui_3019 0.72 -0.0 3,233,239 + Dsui_3019 0.75 -0.2 3,233,427 + +0.1 3,233,435 - -0.4 3,233,435 - -0.4 3,233,493 - -0.8 3,233,596 + Dsui_3020 0.27 +0.8
Or see this region's nucleotide sequence