Experiment: rich media with sodium chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2926 and Dsui_2927 are separated by 243 nucleotides Dsui_2927 and Dsui_2928 are separated by 175 nucleotides
Dsui_2926: Dsui_2926 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,129,523 to 3,130,689
_2926
Dsui_2927: Dsui_2927 - cell wall-associated hydrolase, invasion-associated protein, at 3,130,933 to 3,131,454
_2927
Dsui_2928: Dsui_2928 - ABC-type Fe3+ transport system, periplasmic component, at 3,131,630 to 3,132,652
_2928
Position (kb)
3130
3131
3132 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3129.976 kb on - strand, within Dsui_2926 at 3129.995 kb on - strand, within Dsui_2926 at 3130.019 kb on - strand, within Dsui_2926 at 3130.023 kb on + strand at 3130.125 kb on - strand, within Dsui_2926 at 3130.223 kb on + strand at 3130.242 kb on - strand, within Dsui_2926 at 3130.488 kb on + strand at 3130.496 kb on - strand, within Dsui_2926 at 3130.496 kb on - strand, within Dsui_2926 at 3130.516 kb on - strand, within Dsui_2926 at 3130.685 kb on + strand at 3130.693 kb on - strand at 3130.706 kb on - strand at 3130.760 kb on + strand at 3130.775 kb on + strand at 3130.903 kb on - strand at 3130.963 kb on + strand at 3130.974 kb on + strand at 3130.974 kb on + strand at 3130.983 kb on - strand at 3131.200 kb on + strand, within Dsui_2927 at 3131.574 kb on + strand at 3131.582 kb on - strand at 3131.609 kb on - strand at 3131.615 kb on + strand at 3131.628 kb on + strand at 3131.679 kb on + strand at 3131.716 kb on + strand at 3131.729 kb on + strand at 3131.843 kb on + strand, within Dsui_2928 at 3131.843 kb on + strand, within Dsui_2928 at 3131.891 kb on - strand, within Dsui_2928 at 3131.894 kb on + strand, within Dsui_2928 at 3131.907 kb on + strand, within Dsui_2928 at 3131.957 kb on - strand, within Dsui_2928 at 3132.022 kb on - strand, within Dsui_2928 at 3132.045 kb on - strand, within Dsui_2928 at 3132.075 kb on - strand, within Dsui_2928 at 3132.086 kb on + strand, within Dsui_2928 at 3132.094 kb on - strand, within Dsui_2928 at 3132.099 kb on - strand, within Dsui_2928 at 3132.108 kb on + strand, within Dsui_2928 at 3132.178 kb on - strand, within Dsui_2928 at 3132.238 kb on + strand, within Dsui_2928 at 3132.238 kb on + strand, within Dsui_2928 at 3132.241 kb on - strand, within Dsui_2928 at 3132.246 kb on - strand at 3132.246 kb on - strand, within Dsui_2928 at 3132.246 kb on - strand at 3132.246 kb on - strand at 3132.328 kb on + strand at 3132.427 kb on + strand, within Dsui_2928 at 3132.435 kb on - strand, within Dsui_2928
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM remove 3,129,976 - Dsui_2926 0.39 +0.3 3,129,995 - Dsui_2926 0.40 +1.5 3,130,019 - Dsui_2926 0.43 -1.8 3,130,023 + +0.9 3,130,125 - Dsui_2926 0.52 +0.4 3,130,223 + +0.4 3,130,242 - Dsui_2926 0.62 +0.6 3,130,488 + +0.4 3,130,496 - Dsui_2926 0.83 -0.2 3,130,496 - Dsui_2926 0.83 +0.7 3,130,516 - Dsui_2926 0.85 +0.7 3,130,685 + +1.9 3,130,693 - +0.1 3,130,706 - -0.1 3,130,760 + +0.4 3,130,775 + +1.9 3,130,903 - -0.1 3,130,963 + +0.8 3,130,974 + +0.3 3,130,974 + -0.3 3,130,983 - +0.4 3,131,200 + Dsui_2927 0.51 +1.0 3,131,574 + +0.0 3,131,582 - +0.0 3,131,609 - -1.8 3,131,615 + +0.7 3,131,628 + -0.2 3,131,679 + +0.2 3,131,716 + +0.4 3,131,729 + -0.4 3,131,843 + Dsui_2928 0.21 +0.3 3,131,843 + Dsui_2928 0.21 -0.1 3,131,891 - Dsui_2928 0.26 +0.9 3,131,894 + Dsui_2928 0.26 -0.9 3,131,907 + Dsui_2928 0.27 +0.4 3,131,957 - Dsui_2928 0.32 -0.2 3,132,022 - Dsui_2928 0.38 -0.6 3,132,045 - Dsui_2928 0.41 +0.0 3,132,075 - Dsui_2928 0.43 +0.1 3,132,086 + Dsui_2928 0.45 -0.1 3,132,094 - Dsui_2928 0.45 -1.4 3,132,099 - Dsui_2928 0.46 +0.2 3,132,108 + Dsui_2928 0.47 -0.1 3,132,178 - Dsui_2928 0.54 -0.5 3,132,238 + Dsui_2928 0.59 +0.2 3,132,238 + Dsui_2928 0.59 +0.9 3,132,241 - Dsui_2928 0.60 -0.1 3,132,246 - +2.9 3,132,246 - Dsui_2928 0.60 +0.8 3,132,246 - +1.2 3,132,246 - -1.1 3,132,328 + +1.6 3,132,427 + Dsui_2928 0.78 -0.1 3,132,435 - Dsui_2928 0.79 +0.4
Or see this region's nucleotide sequence