Strain Fitness in Dechlorosoma suillum PS around Dsui_1515

Experiment: rich media with sodium chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1512 and Dsui_1513 are separated by 163 nucleotidesDsui_1513 and Dsui_1514 overlap by 4 nucleotidesDsui_1514 and Dsui_1515 are separated by 15 nucleotidesDsui_1515 and Dsui_1516 are separated by 70 nucleotidesDsui_1516 and Dsui_1517 are separated by 19 nucleotides Dsui_1512: Dsui_1512 - Na+/H+ antiporter NhaD-like permease, at 1,576,011 to 1,577,246 _1512 Dsui_1513: Dsui_1513 - hypothetical protein, at 1,577,410 to 1,577,547 _1513 Dsui_1514: Dsui_1514 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase, at 1,577,544 to 1,578,017 _1514 Dsui_1515: Dsui_1515 - poly(A) polymerase, at 1,578,033 to 1,579,418 _1515 Dsui_1516: Dsui_1516 - HAD-superfamily subfamily IB hydrolase, TIGR01490, at 1,579,489 to 1,580,151 _1516 Dsui_1517: Dsui_1517 - DnaA regulatory inactivator Hda, at 1,580,171 to 1,580,854 _1517 Position (kb) 1578 1579 1580Strain fitness (log2 ratio) -1 0 1 2at 1577.034 kb on - strand, within Dsui_1512at 1577.034 kb on - strand, within Dsui_1512at 1577.056 kb on - strand, within Dsui_1512at 1577.064 kb on - strand, within Dsui_1512at 1577.074 kb on - strand, within Dsui_1512at 1577.074 kb on - strand, within Dsui_1512at 1577.074 kb on - strand, within Dsui_1512at 1577.091 kb on + strandat 1577.135 kb on + strandat 1577.140 kb on + strandat 1577.150 kb on + strandat 1577.150 kb on + strandat 1577.150 kb on + strandat 1577.158 kb on - strandat 1577.158 kb on - strandat 1577.158 kb on - strandat 1577.158 kb on - strandat 1577.158 kb on - strandat 1577.158 kb on - strandat 1577.263 kb on + strandat 1577.263 kb on + strandat 1577.263 kb on + strandat 1577.270 kb on + strandat 1577.270 kb on + strandat 1577.271 kb on - strandat 1577.271 kb on - strandat 1577.278 kb on - strandat 1577.305 kb on - strandat 1577.305 kb on - strandat 1577.324 kb on + strandat 1577.340 kb on - strandat 1577.342 kb on + strandat 1577.406 kb on - strandat 1577.433 kb on + strandat 1577.455 kb on - strand, within Dsui_1513at 1577.459 kb on + strand, within Dsui_1513at 1577.465 kb on - strand, within Dsui_1513at 1577.474 kb on - strand, within Dsui_1513at 1577.492 kb on - strand, within Dsui_1513at 1577.502 kb on + strand, within Dsui_1513at 1577.534 kb on + strandat 1578.136 kb on + strandat 1578.268 kb on + strand, within Dsui_1515at 1578.997 kb on - strand, within Dsui_1515at 1579.071 kb on - strand, within Dsui_1515at 1579.155 kb on - strand, within Dsui_1515at 1579.170 kb on - strand, within Dsui_1515at 1580.176 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
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1,577,034 - Dsui_1512 0.83 +0.4
1,577,034 - Dsui_1512 0.83 +0.2
1,577,056 - Dsui_1512 0.85 +0.1
1,577,064 - Dsui_1512 0.85 -0.3
1,577,074 - Dsui_1512 0.86 -0.8
1,577,074 - Dsui_1512 0.86 -0.5
1,577,074 - Dsui_1512 0.86 -0.2
1,577,091 + +0.6
1,577,135 + -0.5
1,577,140 + +1.2
1,577,150 + +0.1
1,577,150 + +0.6
1,577,150 + -0.5
1,577,158 - +0.6
1,577,158 - +0.1
1,577,158 - +1.6
1,577,158 - -0.4
1,577,158 - -1.0
1,577,158 - +0.3
1,577,263 + +0.2
1,577,263 + -0.3
1,577,263 + +0.3
1,577,270 + +0.6
1,577,270 + +0.4
1,577,271 - +0.1
1,577,271 - -0.3
1,577,278 - -0.4
1,577,305 - +0.0
1,577,305 - +0.5
1,577,324 + +0.5
1,577,340 - -0.2
1,577,342 + +0.5
1,577,406 - -0.4
1,577,433 + +2.0
1,577,455 - Dsui_1513 0.33 -0.1
1,577,459 + Dsui_1513 0.36 -1.1
1,577,465 - Dsui_1513 0.40 -0.2
1,577,474 - Dsui_1513 0.46 -0.1
1,577,492 - Dsui_1513 0.59 -0.0
1,577,502 + Dsui_1513 0.67 -1.2
1,577,534 + -1.1
1,578,136 + -0.2
1,578,268 + Dsui_1515 0.17 -0.5
1,578,997 - Dsui_1515 0.70 -1.2
1,579,071 - Dsui_1515 0.75 +0.7
1,579,155 - Dsui_1515 0.81 -1.0
1,579,170 - Dsui_1515 0.82 +0.1
1,580,176 - +0.0

Or see this region's nucleotide sequence