Experiment: rich media with sodium chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1427 and Dsui_1428 are separated by 19 nucleotides Dsui_1428 and Dsui_1429 are separated by 154 nucleotides Dsui_1429 and Dsui_1430 are separated by 6 nucleotides Dsui_1430 and Dsui_1431 overlap by 1 nucleotides
Dsui_1427: Dsui_1427 - dinuclear metal center protein, YbgI/SA1388 family, at 1,479,435 to 1,480,181
_1427
Dsui_1428: Dsui_1428 - 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase, at 1,480,201 to 1,480,917
_1428
Dsui_1429: Dsui_1429 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 1,481,072 to 1,484,548
_1429
Dsui_1430: Dsui_1430 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 1,484,555 to 1,485,541
_1430
Dsui_1431: Dsui_1431 - chemotaxis protein CheC, inhibitor of MCP methylation, at 1,485,541 to 1,486,158
_1431
Position (kb)
1481
1482
1483
1484
1485 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1480.183 kb on - strand at 1480.234 kb on + strand at 1480.270 kb on - strand at 1480.427 kb on + strand, within Dsui_1428 at 1480.453 kb on - strand, within Dsui_1428 at 1480.524 kb on + strand, within Dsui_1428 at 1480.530 kb on - strand, within Dsui_1428 at 1480.546 kb on + strand, within Dsui_1428 at 1480.625 kb on - strand, within Dsui_1428 at 1480.632 kb on - strand, within Dsui_1428 at 1480.633 kb on - strand, within Dsui_1428 at 1480.635 kb on + strand, within Dsui_1428 at 1480.852 kb on - strand at 1480.960 kb on + strand at 1481.026 kb on + strand at 1481.093 kb on + strand at 1481.129 kb on + strand at 1481.129 kb on + strand at 1481.134 kb on + strand at 1481.134 kb on + strand at 1481.142 kb on - strand at 1481.147 kb on - strand at 1481.164 kb on + strand at 1481.252 kb on - strand at 1481.567 kb on - strand at 1481.567 kb on - strand, within Dsui_1429 at 1481.682 kb on + strand, within Dsui_1429 at 1481.692 kb on + strand, within Dsui_1429 at 1481.769 kb on - strand, within Dsui_1429 at 1481.873 kb on - strand, within Dsui_1429 at 1481.957 kb on + strand, within Dsui_1429 at 1482.018 kb on + strand, within Dsui_1429 at 1482.062 kb on + strand, within Dsui_1429 at 1482.073 kb on + strand, within Dsui_1429 at 1482.108 kb on - strand, within Dsui_1429 at 1482.153 kb on - strand, within Dsui_1429 at 1482.206 kb on + strand, within Dsui_1429 at 1482.272 kb on - strand, within Dsui_1429 at 1482.296 kb on + strand, within Dsui_1429 at 1482.564 kb on - strand, within Dsui_1429 at 1482.564 kb on - strand, within Dsui_1429 at 1482.564 kb on - strand, within Dsui_1429 at 1482.588 kb on - strand, within Dsui_1429 at 1482.644 kb on + strand, within Dsui_1429 at 1482.644 kb on + strand, within Dsui_1429 at 1482.696 kb on - strand, within Dsui_1429 at 1482.727 kb on - strand, within Dsui_1429 at 1482.772 kb on - strand, within Dsui_1429 at 1482.804 kb on - strand, within Dsui_1429 at 1482.843 kb on - strand, within Dsui_1429 at 1483.017 kb on + strand, within Dsui_1429 at 1483.529 kb on - strand, within Dsui_1429 at 1483.727 kb on + strand, within Dsui_1429 at 1483.761 kb on + strand, within Dsui_1429 at 1483.790 kb on + strand, within Dsui_1429 at 1484.030 kb on + strand, within Dsui_1429 at 1484.141 kb on - strand, within Dsui_1429 at 1484.218 kb on + strand at 1484.398 kb on - strand at 1484.405 kb on - strand at 1484.461 kb on - strand at 1484.542 kb on + strand at 1484.639 kb on - strand at 1484.660 kb on + strand, within Dsui_1430 at 1484.932 kb on - strand, within Dsui_1430 at 1484.962 kb on - strand, within Dsui_1430 at 1485.098 kb on + strand, within Dsui_1430 at 1485.184 kb on - strand, within Dsui_1430 at 1485.216 kb on + strand, within Dsui_1430 at 1485.248 kb on + strand, within Dsui_1430 at 1485.289 kb on - strand, within Dsui_1430 at 1485.344 kb on - strand, within Dsui_1430 at 1485.365 kb on - strand, within Dsui_1430 at 1485.420 kb on - strand, within Dsui_1430 at 1485.450 kb on + strand at 1485.486 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM remove 1,480,183 - +0.1 1,480,234 + -0.5 1,480,270 - -0.7 1,480,427 + Dsui_1428 0.32 -0.1 1,480,453 - Dsui_1428 0.35 -0.0 1,480,524 + Dsui_1428 0.45 -0.2 1,480,530 - Dsui_1428 0.46 +1.1 1,480,546 + Dsui_1428 0.48 -0.3 1,480,625 - Dsui_1428 0.59 -0.8 1,480,632 - Dsui_1428 0.60 -0.2 1,480,633 - Dsui_1428 0.60 -0.3 1,480,635 + Dsui_1428 0.61 -0.6 1,480,852 - +0.2 1,480,960 + -0.7 1,481,026 + +0.5 1,481,093 + -0.9 1,481,129 + -0.5 1,481,129 + -0.5 1,481,134 + -0.0 1,481,134 + -1.2 1,481,142 - -0.7 1,481,147 - -1.9 1,481,164 + -0.4 1,481,252 - +2.0 1,481,567 - -0.0 1,481,567 - Dsui_1429 0.14 -0.4 1,481,682 + Dsui_1429 0.18 -0.6 1,481,692 + Dsui_1429 0.18 -1.0 1,481,769 - Dsui_1429 0.20 -0.0 1,481,873 - Dsui_1429 0.23 -0.1 1,481,957 + Dsui_1429 0.25 -0.2 1,482,018 + Dsui_1429 0.27 +0.4 1,482,062 + Dsui_1429 0.28 -1.5 1,482,073 + Dsui_1429 0.29 -1.2 1,482,108 - Dsui_1429 0.30 -1.4 1,482,153 - Dsui_1429 0.31 -1.1 1,482,206 + Dsui_1429 0.33 -0.1 1,482,272 - Dsui_1429 0.35 +0.8 1,482,296 + Dsui_1429 0.35 +0.2 1,482,564 - Dsui_1429 0.43 -0.6 1,482,564 - Dsui_1429 0.43 -0.2 1,482,564 - Dsui_1429 0.43 +0.8 1,482,588 - Dsui_1429 0.44 -0.9 1,482,644 + Dsui_1429 0.45 +0.7 1,482,644 + Dsui_1429 0.45 -0.3 1,482,696 - Dsui_1429 0.47 -0.8 1,482,727 - Dsui_1429 0.48 -0.4 1,482,772 - Dsui_1429 0.49 -0.1 1,482,804 - Dsui_1429 0.50 -0.4 1,482,843 - Dsui_1429 0.51 -0.3 1,483,017 + Dsui_1429 0.56 -0.1 1,483,529 - Dsui_1429 0.71 +0.0 1,483,727 + Dsui_1429 0.76 -0.6 1,483,761 + Dsui_1429 0.77 -1.0 1,483,790 + Dsui_1429 0.78 -0.3 1,484,030 + Dsui_1429 0.85 +0.7 1,484,141 - Dsui_1429 0.88 -0.1 1,484,218 + -0.4 1,484,398 - +0.7 1,484,405 - -0.9 1,484,461 - +0.7 1,484,542 + -0.2 1,484,639 - -0.8 1,484,660 + Dsui_1430 0.11 -1.8 1,484,932 - Dsui_1430 0.38 -1.4 1,484,962 - Dsui_1430 0.41 -1.6 1,485,098 + Dsui_1430 0.55 -0.2 1,485,184 - Dsui_1430 0.64 -0.0 1,485,216 + Dsui_1430 0.67 -0.6 1,485,248 + Dsui_1430 0.70 -0.1 1,485,289 - Dsui_1430 0.74 +1.0 1,485,344 - Dsui_1430 0.80 -0.2 1,485,365 - Dsui_1430 0.82 -2.4 1,485,420 - Dsui_1430 0.88 -0.9 1,485,450 + +0.4 1,485,486 - -0.8
Or see this region's nucleotide sequence