Strain Fitness in Dechlorosoma suillum PS around Dsui_1039

Experiment: rich media with sodium chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1037 and Dsui_1038 are separated by 75 nucleotidesDsui_1038 and Dsui_1039 are separated by 13 nucleotidesDsui_1039 and Dsui_1040 are separated by 82 nucleotides Dsui_1037: Dsui_1037 - ribosomal protein L25, Ctc-form, at 1,069,177 to 1,069,779 _1037 Dsui_1038: Dsui_1038 - peptidyl-tRNA hydrolase, at 1,069,855 to 1,070,433 _1038 Dsui_1039: Dsui_1039 - GTP-binding protein YchF, at 1,070,447 to 1,071,538 _1039 Dsui_1040: Dsui_1040 - glutamyl-queuosine tRNA(Asp) synthetase, at 1,071,621 to 1,072,532 _1040 Position (kb) 1070 1071 1072Strain fitness (log2 ratio) -1 0 1at 1069.671 kb on + strand, within Dsui_1037at 1069.712 kb on - strand, within Dsui_1037at 1070.507 kb on + strandat 1071.570 kb on + strandat 1071.804 kb on + strand, within Dsui_1040at 1071.896 kb on - strand, within Dsui_1040at 1071.956 kb on + strand, within Dsui_1040at 1071.989 kb on + strand, within Dsui_1040at 1072.035 kb on + strand, within Dsui_1040at 1072.105 kb on + strand, within Dsui_1040at 1072.181 kb on + strand, within Dsui_1040at 1072.187 kb on + strand, within Dsui_1040at 1072.269 kb on - strand, within Dsui_1040at 1072.351 kb on + strand, within Dsui_1040at 1072.466 kb on + strandat 1072.484 kb on + strandat 1072.491 kb on - strandat 1072.530 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
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1,069,671 + Dsui_1037 0.82 +0.7
1,069,712 - Dsui_1037 0.89 -0.8
1,070,507 + -0.6
1,071,570 + -0.6
1,071,804 + Dsui_1040 0.20 -0.8
1,071,896 - Dsui_1040 0.30 -1.1
1,071,956 + Dsui_1040 0.37 -1.0
1,071,989 + Dsui_1040 0.40 -0.2
1,072,035 + Dsui_1040 0.45 +1.0
1,072,105 + Dsui_1040 0.53 -0.2
1,072,181 + Dsui_1040 0.61 +0.2
1,072,187 + Dsui_1040 0.62 -0.9
1,072,269 - Dsui_1040 0.71 +1.0
1,072,351 + Dsui_1040 0.80 +1.2
1,072,466 + -1.3
1,072,484 + -0.2
1,072,491 - -0.2
1,072,530 - +0.6

Or see this region's nucleotide sequence