Experiment: rich media with sodium chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0406 and Dsui_0407 are separated by 9 nucleotides Dsui_0407 and Dsui_0408 are separated by 65 nucleotides Dsui_0408 and Dsui_0409 overlap by 4 nucleotides
Dsui_0406: Dsui_0406 - Rhodanese-related sulfurtransferase, at 405,185 to 405,508
_0406
Dsui_0407: Dsui_0407 - protein-L-isoaspartate carboxylmethyltransferase, at 405,518 to 406,183
_0407
Dsui_0408: Dsui_0408 - cation/multidrug efflux pump, at 406,249 to 409,452
_0408
Dsui_0409: Dsui_0409 - RND family efflux transporter, MFP subunit, at 409,449 to 410,603
_0409
Position (kb) 406
407
408
409
410 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 405.286 kb on - strand, within Dsui_0406 at 405.359 kb on + strand, within Dsui_0406 at 405.367 kb on - strand, within Dsui_0406 at 405.683 kb on - strand, within Dsui_0407 at 406.345 kb on + strand at 406.394 kb on - strand at 406.451 kb on - strand at 406.498 kb on + strand at 406.571 kb on - strand, within Dsui_0408 at 406.613 kb on - strand, within Dsui_0408 at 406.713 kb on + strand, within Dsui_0408 at 406.799 kb on + strand, within Dsui_0408 at 406.812 kb on + strand, within Dsui_0408 at 406.838 kb on + strand, within Dsui_0408 at 406.844 kb on - strand, within Dsui_0408 at 406.846 kb on - strand, within Dsui_0408 at 406.856 kb on - strand, within Dsui_0408 at 406.872 kb on + strand at 406.907 kb on - strand, within Dsui_0408 at 406.946 kb on - strand, within Dsui_0408 at 406.980 kb on + strand, within Dsui_0408 at 407.103 kb on - strand, within Dsui_0408 at 407.151 kb on - strand, within Dsui_0408 at 407.162 kb on + strand at 407.180 kb on - strand, within Dsui_0408 at 407.180 kb on - strand, within Dsui_0408 at 407.210 kb on + strand, within Dsui_0408 at 407.210 kb on + strand, within Dsui_0408 at 407.220 kb on + strand, within Dsui_0408 at 407.318 kb on - strand, within Dsui_0408 at 407.582 kb on + strand at 407.687 kb on + strand, within Dsui_0408 at 407.861 kb on + strand, within Dsui_0408 at 408.190 kb on + strand, within Dsui_0408 at 408.190 kb on + strand, within Dsui_0408 at 408.191 kb on + strand, within Dsui_0408 at 408.199 kb on - strand, within Dsui_0408 at 408.204 kb on - strand, within Dsui_0408 at 408.297 kb on + strand, within Dsui_0408 at 408.394 kb on - strand, within Dsui_0408 at 408.467 kb on + strand, within Dsui_0408 at 408.495 kb on + strand, within Dsui_0408 at 408.495 kb on + strand at 408.681 kb on + strand, within Dsui_0408 at 408.771 kb on + strand, within Dsui_0408 at 408.884 kb on + strand, within Dsui_0408 at 408.962 kb on + strand, within Dsui_0408 at 408.999 kb on - strand, within Dsui_0408 at 409.009 kb on - strand, within Dsui_0408 at 409.024 kb on + strand, within Dsui_0408 at 409.055 kb on - strand, within Dsui_0408 at 409.062 kb on + strand at 409.070 kb on + strand at 409.078 kb on - strand, within Dsui_0408 at 409.113 kb on + strand, within Dsui_0408 at 409.113 kb on + strand, within Dsui_0408 at 409.154 kb on + strand at 409.160 kb on + strand at 409.265 kb on - strand at 409.272 kb on + strand at 409.350 kb on + strand at 409.378 kb on + strand at 409.609 kb on + strand at 409.617 kb on - strand, within Dsui_0409 at 409.631 kb on + strand, within Dsui_0409 at 409.669 kb on + strand, within Dsui_0409 at 409.697 kb on - strand, within Dsui_0409 at 409.747 kb on - strand, within Dsui_0409 at 409.747 kb on - strand, within Dsui_0409 at 409.852 kb on - strand, within Dsui_0409 at 409.908 kb on - strand, within Dsui_0409 at 409.980 kb on - strand, within Dsui_0409 at 410.171 kb on - strand, within Dsui_0409 at 410.252 kb on + strand, within Dsui_0409
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM remove 405,286 - Dsui_0406 0.31 -0.2 405,359 + Dsui_0406 0.54 -0.1 405,367 - Dsui_0406 0.56 +0.3 405,683 - Dsui_0407 0.25 -0.7 406,345 + +0.1 406,394 - -0.0 406,451 - -0.2 406,498 + -0.0 406,571 - Dsui_0408 0.10 -0.3 406,613 - Dsui_0408 0.11 +0.6 406,713 + Dsui_0408 0.14 -0.4 406,799 + Dsui_0408 0.17 +0.8 406,812 + Dsui_0408 0.18 -0.5 406,838 + Dsui_0408 0.18 +0.0 406,844 - Dsui_0408 0.19 -0.0 406,846 - Dsui_0408 0.19 +1.1 406,856 - Dsui_0408 0.19 -0.4 406,872 + -0.6 406,907 - Dsui_0408 0.21 +0.0 406,946 - Dsui_0408 0.22 +0.2 406,980 + Dsui_0408 0.23 -0.3 407,103 - Dsui_0408 0.27 +0.4 407,151 - Dsui_0408 0.28 -0.3 407,162 + -0.6 407,180 - Dsui_0408 0.29 -0.3 407,180 - Dsui_0408 0.29 -0.5 407,210 + Dsui_0408 0.30 -0.3 407,210 + Dsui_0408 0.30 -0.1 407,220 + Dsui_0408 0.30 +1.2 407,318 - Dsui_0408 0.33 +1.1 407,582 + +0.4 407,687 + Dsui_0408 0.45 -0.0 407,861 + Dsui_0408 0.50 -0.3 408,190 + Dsui_0408 0.61 +0.4 408,190 + Dsui_0408 0.61 +0.5 408,191 + Dsui_0408 0.61 +0.1 408,199 - Dsui_0408 0.61 -0.6 408,204 - Dsui_0408 0.61 +0.1 408,297 + Dsui_0408 0.64 +0.6 408,394 - Dsui_0408 0.67 +0.6 408,467 + Dsui_0408 0.69 -0.6 408,495 + Dsui_0408 0.70 +0.4 408,495 + -0.0 408,681 + Dsui_0408 0.76 -0.4 408,771 + Dsui_0408 0.79 +0.4 408,884 + Dsui_0408 0.82 -0.1 408,962 + Dsui_0408 0.85 +0.6 408,999 - Dsui_0408 0.86 +0.0 409,009 - Dsui_0408 0.86 -1.0 409,024 + Dsui_0408 0.87 +0.9 409,055 - Dsui_0408 0.88 +0.2 409,062 + +1.4 409,070 + +2.0 409,078 - Dsui_0408 0.88 -0.4 409,113 + Dsui_0408 0.89 +0.5 409,113 + Dsui_0408 0.89 +0.6 409,154 + +0.3 409,160 + +0.5 409,265 - +0.1 409,272 + -0.6 409,350 + +2.0 409,378 + +0.4 409,609 + +0.4 409,617 - Dsui_0409 0.15 -0.6 409,631 + Dsui_0409 0.16 -0.6 409,669 + Dsui_0409 0.19 -1.3 409,697 - Dsui_0409 0.21 -1.8 409,747 - Dsui_0409 0.26 +1.4 409,747 - Dsui_0409 0.26 -1.2 409,852 - Dsui_0409 0.35 -0.0 409,908 - Dsui_0409 0.40 -0.2 409,980 - Dsui_0409 0.46 -3.8 410,171 - Dsui_0409 0.63 -1.1 410,252 + Dsui_0409 0.70 -0.2
Or see this region's nucleotide sequence