Strain Fitness in Shewanella oneidensis MR-1 around SO2426
Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Thallium(I) acetate 0.008 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,533,001 | + | SO2424 | 0.36 | -0.1 | |
2,533,001 | + | SO2424 | 0.36 | -0.2 | |
2,533,009 | - | SO2424 | 0.37 | -0.1 | |
2,533,193 | - | SO2424 | 0.53 | +0.1 | |
2,533,226 | + | SO2424 | 0.56 | +0.3 | |
2,533,351 | + | SO2424 | 0.67 | +0.3 | |
2,533,388 | + | SO2424 | 0.71 | +0.3 | |
2,533,529 | - | SO2424 | 0.83 | +0.1 | |
2,533,564 | - | SO2424 | 0.86 | +0.5 | |
2,533,747 | + | -0.4 | |||
2,533,747 | + | +0.6 | |||
2,533,755 | - | -0.8 | |||
2,533,920 | - | -2.1 | |||
2,534,387 | + | SO2426 | 0.68 | -2.5 | |
2,534,473 | - | SO2426 | 0.80 | -3.6 | |
2,534,516 | + | SO2426 | 0.86 | -4.7 | |
2,534,516 | + | SO2426 | 0.86 | -3.7 | |
2,534,688 | - | +0.1 | |||
2,534,853 | - | +0.0 | |||
2,534,853 | - | -0.1 | |||
2,535,034 | - | +0.9 | |||
2,535,038 | + | SO2427 | 0.10 | -0.7 | |
2,535,075 | + | SO2427 | 0.11 | +0.7 | |
2,535,231 | + | SO2427 | 0.18 | +1.2 | |
2,535,269 | - | SO2427 | 0.19 | +0.0 | |
2,535,334 | + | SO2427 | 0.22 | +0.0 | |
2,535,376 | - | SO2427 | 0.23 | -0.1 | |
2,535,436 | - | SO2427 | 0.26 | +0.2 | |
2,535,484 | + | SO2427 | 0.27 | -0.4 | |
2,535,486 | + | SO2427 | 0.28 | -0.4 | |
2,535,492 | - | SO2427 | 0.28 | -0.1 | |
2,535,492 | - | SO2427 | 0.28 | -0.1 | |
2,535,492 | - | SO2427 | 0.28 | +0.2 | |
2,535,507 | + | SO2427 | 0.28 | -0.4 |
Or see this region's nucleotide sequence