Strain Fitness in Shewanella oneidensis MR-1 around SO1109

Experiment: Thallium(I) acetate 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntnqrF-2 and apbE are separated by 99 nucleotidesapbE and SO1110 are separated by 11 nucleotidesSO1110 and bfr2 are separated by 240 nucleotidesbfr2 and bfr1 are separated by 9 nucleotides SO1108: nqrF-2 - NADH:ubiquinone oxidoreductase, Na translocating, beta subunit (NCBI ptt file), at 1,150,843 to 1,152,099 nqrF-2 SO1109: apbE - thiamin biosynthesis lipoprotein ApbE (NCBI ptt file), at 1,152,199 to 1,153,242 apbE SO1110: SO1110 - conserved hypothetical protein (NCBI ptt file), at 1,153,254 to 1,153,478 SO1110 SO1111: bfr2 - bacterioferritin subunit 2 (NCBI ptt file), at 1,153,719 to 1,154,192 bfr2 SO1112: bfr1 - bacterioferritin subunit 1 (NCBI ptt file), at 1,154,202 to 1,154,669 bfr1 Position (kb) 1152 1153 1154Strain fitness (log2 ratio) -1 0 1at 1152.137 kb on + strandat 1153.248 kb on + strandat 1153.486 kb on - strandat 1153.817 kb on + strand, within bfr2at 1153.835 kb on + strand, within bfr2at 1153.870 kb on + strand, within bfr2at 1153.882 kb on + strand, within bfr2at 1153.890 kb on - strand, within bfr2at 1153.917 kb on + strand, within bfr2at 1154.016 kb on - strand, within bfr2at 1154.029 kb on + strand, within bfr2at 1154.029 kb on + strand, within bfr2at 1154.029 kb on + strand, within bfr2at 1154.029 kb on + strand, within bfr2at 1154.029 kb on + strand, within bfr2at 1154.029 kb on + strand, within bfr2at 1154.029 kb on + strand, within bfr2at 1154.029 kb on + strand, within bfr2at 1154.029 kb on + strand, within bfr2at 1154.037 kb on - strand, within bfr2at 1154.037 kb on - strand, within bfr2at 1154.037 kb on - strand, within bfr2at 1154.037 kb on - strand, within bfr2at 1154.037 kb on - strand, within bfr2at 1154.037 kb on - strand, within bfr2at 1154.037 kb on - strand, within bfr2at 1154.054 kb on + strand, within bfr2at 1154.193 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
remove
1,152,137 + -0.5
1,153,248 + -0.5
1,153,486 - +1.2
1,153,817 + bfr2 SO1111 0.21 -0.6
1,153,835 + bfr2 SO1111 0.24 +0.1
1,153,870 + bfr2 SO1111 0.32 -0.4
1,153,882 + bfr2 SO1111 0.34 +0.8
1,153,890 - bfr2 SO1111 0.36 -0.5
1,153,917 + bfr2 SO1111 0.42 +0.4
1,154,016 - bfr2 SO1111 0.63 -0.8
1,154,029 + bfr2 SO1111 0.65 -0.1
1,154,029 + bfr2 SO1111 0.65 +0.0
1,154,029 + bfr2 SO1111 0.65 -0.3
1,154,029 + bfr2 SO1111 0.65 +0.4
1,154,029 + bfr2 SO1111 0.65 +0.3
1,154,029 + bfr2 SO1111 0.65 -0.4
1,154,029 + bfr2 SO1111 0.65 -0.6
1,154,029 + bfr2 SO1111 0.65 -0.3
1,154,029 + bfr2 SO1111 0.65 +0.5
1,154,037 - bfr2 SO1111 0.67 +0.0
1,154,037 - bfr2 SO1111 0.67 +0.6
1,154,037 - bfr2 SO1111 0.67 +0.4
1,154,037 - bfr2 SO1111 0.67 +0.6
1,154,037 - bfr2 SO1111 0.67 +0.6
1,154,037 - bfr2 SO1111 0.67 +0.1
1,154,037 - bfr2 SO1111 0.67 -0.1
1,154,054 + bfr2 SO1111 0.71 +0.4
1,154,193 - -0.9

Or see this region's nucleotide sequence