Strain Fitness in Marinobacter adhaerens HP15 around HP15_3240

Experiment: succinate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3239 and HP15_3240 are separated by 71 nucleotidesHP15_3240 and HP15_3241 are separated by 145 nucleotidesHP15_3241 and HP15_3242 are separated by 22 nucleotides HP15_3239: HP15_3239 - ion channel DMI1, at 3,392,389 to 3,394,335 _3239 HP15_3240: HP15_3240 - sulfate permease family protein, at 3,394,407 to 3,396,125 _3240 HP15_3241: HP15_3241 - thioredoxin-like protein, at 3,396,271 to 3,396,450 _3241 HP15_3242: HP15_3242 - ferric uptake regulator, CjrA, predicted, at 3,396,473 to 3,397,483 _3242 Position (kb) 3394 3395 3396 3397Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3393.433 kb on - strand, within HP15_3239at 3393.460 kb on + strand, within HP15_3239at 3393.497 kb on + strand, within HP15_3239at 3393.512 kb on + strand, within HP15_3239at 3393.518 kb on + strand, within HP15_3239at 3393.523 kb on + strand, within HP15_3239at 3393.526 kb on - strand, within HP15_3239at 3393.585 kb on - strand, within HP15_3239at 3393.611 kb on + strand, within HP15_3239at 3393.611 kb on + strand, within HP15_3239at 3393.611 kb on + strand, within HP15_3239at 3393.611 kb on + strand, within HP15_3239at 3393.619 kb on - strand, within HP15_3239at 3393.729 kb on - strand, within HP15_3239at 3393.806 kb on + strand, within HP15_3239at 3393.843 kb on + strand, within HP15_3239at 3393.936 kb on + strand, within HP15_3239at 3393.944 kb on - strand, within HP15_3239at 3393.981 kb on + strand, within HP15_3239at 3394.131 kb on - strand, within HP15_3239at 3394.282 kb on - strandat 3394.340 kb on - strandat 3394.438 kb on + strandat 3394.477 kb on + strandat 3394.517 kb on + strandat 3394.567 kb on + strandat 3394.596 kb on - strand, within HP15_3240at 3394.596 kb on - strand, within HP15_3240at 3394.752 kb on + strand, within HP15_3240at 3394.780 kb on + strand, within HP15_3240at 3394.798 kb on - strand, within HP15_3240at 3394.877 kb on - strand, within HP15_3240at 3395.074 kb on + strand, within HP15_3240at 3395.193 kb on + strand, within HP15_3240at 3395.193 kb on + strand, within HP15_3240at 3395.193 kb on + strand, within HP15_3240at 3395.337 kb on - strand, within HP15_3240at 3395.557 kb on + strand, within HP15_3240at 3395.565 kb on - strand, within HP15_3240at 3395.587 kb on - strand, within HP15_3240at 3395.639 kb on + strand, within HP15_3240at 3395.720 kb on - strand, within HP15_3240at 3395.843 kb on + strand, within HP15_3240at 3395.862 kb on - strand, within HP15_3240at 3395.872 kb on - strand, within HP15_3240at 3395.882 kb on - strand, within HP15_3240at 3395.984 kb on + strandat 3396.024 kb on - strandat 3396.133 kb on + strandat 3396.141 kb on - strandat 3396.262 kb on - strandat 3396.526 kb on - strandat 3396.570 kb on + strandat 3396.594 kb on + strand, within HP15_3242at 3396.616 kb on + strand, within HP15_3242at 3396.704 kb on + strand, within HP15_3242at 3396.705 kb on + strand, within HP15_3242at 3396.712 kb on - strand, within HP15_3242at 3396.721 kb on + strand, within HP15_3242at 3396.771 kb on + strand, within HP15_3242at 3396.779 kb on - strand, within HP15_3242at 3396.781 kb on + strand, within HP15_3242at 3396.789 kb on - strand, within HP15_3242at 3396.980 kb on + strand, within HP15_3242at 3396.988 kb on - strand, within HP15_3242at 3397.011 kb on + strand, within HP15_3242at 3397.011 kb on + strand, within HP15_3242at 3397.011 kb on + strand, within HP15_3242at 3397.019 kb on - strand, within HP15_3242at 3397.050 kb on + strand, within HP15_3242

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate
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3,393,433 - HP15_3239 0.54 -0.3
3,393,460 + HP15_3239 0.55 +1.3
3,393,497 + HP15_3239 0.57 +1.3
3,393,512 + HP15_3239 0.58 +1.3
3,393,518 + HP15_3239 0.58 -0.2
3,393,523 + HP15_3239 0.58 -0.4
3,393,526 - HP15_3239 0.58 +1.3
3,393,585 - HP15_3239 0.61 -0.5
3,393,611 + HP15_3239 0.63 +0.3
3,393,611 + HP15_3239 0.63 -0.5
3,393,611 + HP15_3239 0.63 +0.7
3,393,611 + HP15_3239 0.63 -0.4
3,393,619 - HP15_3239 0.63 -0.4
3,393,729 - HP15_3239 0.69 +1.4
3,393,806 + HP15_3239 0.73 -0.4
3,393,843 + HP15_3239 0.75 +0.4
3,393,936 + HP15_3239 0.79 +1.7
3,393,944 - HP15_3239 0.80 -0.3
3,393,981 + HP15_3239 0.82 +1.3
3,394,131 - HP15_3239 0.89 +1.5
3,394,282 - -0.0
3,394,340 - +1.3
3,394,438 + +1.9
3,394,477 + -0.4
3,394,517 + -0.0
3,394,567 + +1.0
3,394,596 - HP15_3240 0.11 +0.3
3,394,596 - HP15_3240 0.11 +0.2
3,394,752 + HP15_3240 0.20 +0.7
3,394,780 + HP15_3240 0.22 +0.3
3,394,798 - HP15_3240 0.23 -0.4
3,394,877 - HP15_3240 0.27 +0.0
3,395,074 + HP15_3240 0.39 +0.9
3,395,193 + HP15_3240 0.46 +1.5
3,395,193 + HP15_3240 0.46 -0.3
3,395,193 + HP15_3240 0.46 +1.5
3,395,337 - HP15_3240 0.54 +1.6
3,395,557 + HP15_3240 0.67 -1.2
3,395,565 - HP15_3240 0.67 +1.9
3,395,587 - HP15_3240 0.69 -2.7
3,395,639 + HP15_3240 0.72 +0.1
3,395,720 - HP15_3240 0.76 -0.1
3,395,843 + HP15_3240 0.84 +1.7
3,395,862 - HP15_3240 0.85 +2.8
3,395,872 - HP15_3240 0.85 -0.8
3,395,882 - HP15_3240 0.86 -0.4
3,395,984 + +0.2
3,396,024 - +0.8
3,396,133 + -1.8
3,396,141 - +0.2
3,396,262 - +0.3
3,396,526 - -0.5
3,396,570 + -1.1
3,396,594 + HP15_3242 0.12 +0.7
3,396,616 + HP15_3242 0.14 -0.0
3,396,704 + HP15_3242 0.23 -0.1
3,396,705 + HP15_3242 0.23 +0.9
3,396,712 - HP15_3242 0.24 -0.5
3,396,721 + HP15_3242 0.25 +1.6
3,396,771 + HP15_3242 0.29 +1.2
3,396,779 - HP15_3242 0.30 -0.7
3,396,781 + HP15_3242 0.30 -0.6
3,396,789 - HP15_3242 0.31 +0.4
3,396,980 + HP15_3242 0.50 +1.3
3,396,988 - HP15_3242 0.51 +0.0
3,397,011 + HP15_3242 0.53 -0.4
3,397,011 + HP15_3242 0.53 -0.4
3,397,011 + HP15_3242 0.53 +0.1
3,397,019 - HP15_3242 0.54 -0.7
3,397,050 + HP15_3242 0.57 +0.1

Or see this region's nucleotide sequence