Experiment: succinate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2266 and HP15_2267 are separated by 124 nucleotides HP15_2267 and HP15_2268 are separated by 114 nucleotides HP15_2268 and HP15_2269 are separated by 65 nucleotides
HP15_2266: HP15_2266 - rRNA (guanine-N(2)-)-methyltransferase, at 2,387,137 to 2,388,183
_2266
HP15_2267: HP15_2267 - hypothetical protein, at 2,388,308 to 2,388,487
_2267
HP15_2268: HP15_2268 - carbonate dehydratase, at 2,388,602 to 2,389,285
_2268
HP15_2269: HP15_2269 - NAD-specific glutamate dehydrogenase, at 2,389,351 to 2,394,237
_2269
Position (kb)
2388
2389 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2387.336 kb on + strand, within HP15_2266 at 2387.366 kb on - strand, within HP15_2266 at 2387.402 kb on + strand, within HP15_2266 at 2387.402 kb on + strand, within HP15_2266 at 2387.410 kb on - strand, within HP15_2266 at 2387.435 kb on + strand, within HP15_2266 at 2387.438 kb on - strand, within HP15_2266 at 2387.450 kb on - strand, within HP15_2266 at 2387.496 kb on + strand, within HP15_2266 at 2387.589 kb on - strand, within HP15_2266 at 2387.706 kb on + strand, within HP15_2266 at 2387.767 kb on - strand, within HP15_2266 at 2387.813 kb on + strand, within HP15_2266 at 2387.813 kb on + strand, within HP15_2266 at 2387.813 kb on + strand, within HP15_2266 at 2387.821 kb on - strand, within HP15_2266 at 2387.886 kb on + strand, within HP15_2266 at 2387.935 kb on - strand, within HP15_2266 at 2387.979 kb on + strand, within HP15_2266 at 2388.028 kb on + strand, within HP15_2266 at 2388.188 kb on - strand at 2388.197 kb on - strand at 2388.216 kb on - strand at 2388.352 kb on - strand, within HP15_2267 at 2388.368 kb on - strand, within HP15_2267 at 2388.537 kb on - strand at 2388.631 kb on + strand at 2388.631 kb on + strand at 2388.670 kb on - strand at 2388.855 kb on + strand, within HP15_2268 at 2388.972 kb on - strand, within HP15_2268 at 2388.986 kb on + strand, within HP15_2268 at 2389.058 kb on + strand, within HP15_2268 at 2389.058 kb on + strand, within HP15_2268 at 2389.058 kb on + strand, within HP15_2268 at 2389.066 kb on - strand, within HP15_2268 at 2389.143 kb on - strand, within HP15_2268 at 2389.183 kb on - strand, within HP15_2268 at 2389.337 kb on + strand at 2389.345 kb on - strand at 2389.372 kb on - strand at 2389.386 kb on + strand at 2389.396 kb on + strand at 2389.424 kb on - strand at 2389.463 kb on + strand at 2389.463 kb on + strand at 2389.463 kb on + strand at 2389.463 kb on + strand at 2389.463 kb on + strand at 2389.471 kb on - strand at 2389.471 kb on - strand at 2389.471 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate remove 2,387,336 + HP15_2266 0.19 +0.1 2,387,366 - HP15_2266 0.22 -2.4 2,387,402 + HP15_2266 0.25 +1.0 2,387,402 + HP15_2266 0.25 -0.2 2,387,410 - HP15_2266 0.26 +2.0 2,387,435 + HP15_2266 0.28 +1.4 2,387,438 - HP15_2266 0.29 -0.3 2,387,450 - HP15_2266 0.30 +1.2 2,387,496 + HP15_2266 0.34 -0.2 2,387,589 - HP15_2266 0.43 +0.6 2,387,706 + HP15_2266 0.54 -0.7 2,387,767 - HP15_2266 0.60 -0.7 2,387,813 + HP15_2266 0.65 +1.1 2,387,813 + HP15_2266 0.65 +0.9 2,387,813 + HP15_2266 0.65 -0.0 2,387,821 - HP15_2266 0.65 -0.2 2,387,886 + HP15_2266 0.72 -0.1 2,387,935 - HP15_2266 0.76 -0.3 2,387,979 + HP15_2266 0.80 -0.5 2,388,028 + HP15_2266 0.85 +2.5 2,388,188 - +0.5 2,388,197 - +1.2 2,388,216 - -0.7 2,388,352 - HP15_2267 0.24 -0.8 2,388,368 - HP15_2267 0.33 -1.0 2,388,537 - -0.3 2,388,631 + +1.3 2,388,631 + +1.4 2,388,670 - +0.7 2,388,855 + HP15_2268 0.37 +1.3 2,388,972 - HP15_2268 0.54 +1.9 2,388,986 + HP15_2268 0.56 -1.6 2,389,058 + HP15_2268 0.67 -0.9 2,389,058 + HP15_2268 0.67 +1.2 2,389,058 + HP15_2268 0.67 -1.1 2,389,066 - HP15_2268 0.68 +0.2 2,389,143 - HP15_2268 0.79 -0.6 2,389,183 - HP15_2268 0.85 +1.7 2,389,337 + +0.3 2,389,345 - +0.5 2,389,372 - -2.2 2,389,386 + +1.5 2,389,396 + +0.4 2,389,424 - +1.0 2,389,463 + -0.7 2,389,463 + -0.9 2,389,463 + -0.1 2,389,463 + +0.2 2,389,463 + +2.0 2,389,471 - -0.5 2,389,471 - +1.6 2,389,471 - +1.1
Or see this region's nucleotide sequence