Strain Fitness in Marinobacter adhaerens HP15 around HP15_2267

Experiment: succinate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2266 and HP15_2267 are separated by 124 nucleotidesHP15_2267 and HP15_2268 are separated by 114 nucleotidesHP15_2268 and HP15_2269 are separated by 65 nucleotides HP15_2266: HP15_2266 - rRNA (guanine-N(2)-)-methyltransferase, at 2,387,137 to 2,388,183 _2266 HP15_2267: HP15_2267 - hypothetical protein, at 2,388,308 to 2,388,487 _2267 HP15_2268: HP15_2268 - carbonate dehydratase, at 2,388,602 to 2,389,285 _2268 HP15_2269: HP15_2269 - NAD-specific glutamate dehydrogenase, at 2,389,351 to 2,394,237 _2269 Position (kb) 2388 2389Strain fitness (log2 ratio) -2 -1 0 1 2at 2387.336 kb on + strand, within HP15_2266at 2387.366 kb on - strand, within HP15_2266at 2387.402 kb on + strand, within HP15_2266at 2387.402 kb on + strand, within HP15_2266at 2387.410 kb on - strand, within HP15_2266at 2387.435 kb on + strand, within HP15_2266at 2387.438 kb on - strand, within HP15_2266at 2387.450 kb on - strand, within HP15_2266at 2387.496 kb on + strand, within HP15_2266at 2387.589 kb on - strand, within HP15_2266at 2387.706 kb on + strand, within HP15_2266at 2387.767 kb on - strand, within HP15_2266at 2387.813 kb on + strand, within HP15_2266at 2387.813 kb on + strand, within HP15_2266at 2387.813 kb on + strand, within HP15_2266at 2387.821 kb on - strand, within HP15_2266at 2387.886 kb on + strand, within HP15_2266at 2387.935 kb on - strand, within HP15_2266at 2387.979 kb on + strand, within HP15_2266at 2388.028 kb on + strand, within HP15_2266at 2388.188 kb on - strandat 2388.197 kb on - strandat 2388.216 kb on - strandat 2388.352 kb on - strand, within HP15_2267at 2388.368 kb on - strand, within HP15_2267at 2388.537 kb on - strandat 2388.631 kb on + strandat 2388.631 kb on + strandat 2388.670 kb on - strandat 2388.855 kb on + strand, within HP15_2268at 2388.972 kb on - strand, within HP15_2268at 2388.986 kb on + strand, within HP15_2268at 2389.058 kb on + strand, within HP15_2268at 2389.058 kb on + strand, within HP15_2268at 2389.058 kb on + strand, within HP15_2268at 2389.066 kb on - strand, within HP15_2268at 2389.143 kb on - strand, within HP15_2268at 2389.183 kb on - strand, within HP15_2268at 2389.337 kb on + strandat 2389.345 kb on - strandat 2389.372 kb on - strandat 2389.386 kb on + strandat 2389.396 kb on + strandat 2389.424 kb on - strandat 2389.463 kb on + strandat 2389.463 kb on + strandat 2389.463 kb on + strandat 2389.463 kb on + strandat 2389.463 kb on + strandat 2389.471 kb on - strandat 2389.471 kb on - strandat 2389.471 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate
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2,387,336 + HP15_2266 0.19 +0.1
2,387,366 - HP15_2266 0.22 -2.4
2,387,402 + HP15_2266 0.25 +1.0
2,387,402 + HP15_2266 0.25 -0.2
2,387,410 - HP15_2266 0.26 +2.0
2,387,435 + HP15_2266 0.28 +1.4
2,387,438 - HP15_2266 0.29 -0.3
2,387,450 - HP15_2266 0.30 +1.2
2,387,496 + HP15_2266 0.34 -0.2
2,387,589 - HP15_2266 0.43 +0.6
2,387,706 + HP15_2266 0.54 -0.7
2,387,767 - HP15_2266 0.60 -0.7
2,387,813 + HP15_2266 0.65 +1.1
2,387,813 + HP15_2266 0.65 +0.9
2,387,813 + HP15_2266 0.65 -0.0
2,387,821 - HP15_2266 0.65 -0.2
2,387,886 + HP15_2266 0.72 -0.1
2,387,935 - HP15_2266 0.76 -0.3
2,387,979 + HP15_2266 0.80 -0.5
2,388,028 + HP15_2266 0.85 +2.5
2,388,188 - +0.5
2,388,197 - +1.2
2,388,216 - -0.7
2,388,352 - HP15_2267 0.24 -0.8
2,388,368 - HP15_2267 0.33 -1.0
2,388,537 - -0.3
2,388,631 + +1.3
2,388,631 + +1.4
2,388,670 - +0.7
2,388,855 + HP15_2268 0.37 +1.3
2,388,972 - HP15_2268 0.54 +1.9
2,388,986 + HP15_2268 0.56 -1.6
2,389,058 + HP15_2268 0.67 -0.9
2,389,058 + HP15_2268 0.67 +1.2
2,389,058 + HP15_2268 0.67 -1.1
2,389,066 - HP15_2268 0.68 +0.2
2,389,143 - HP15_2268 0.79 -0.6
2,389,183 - HP15_2268 0.85 +1.7
2,389,337 + +0.3
2,389,345 - +0.5
2,389,372 - -2.2
2,389,386 + +1.5
2,389,396 + +0.4
2,389,424 - +1.0
2,389,463 + -0.7
2,389,463 + -0.9
2,389,463 + -0.1
2,389,463 + +0.2
2,389,463 + +2.0
2,389,471 - -0.5
2,389,471 - +1.6
2,389,471 - +1.1

Or see this region's nucleotide sequence