Experiment: succinate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1840 and HP15_1841 are separated by 5 nucleotides HP15_1841 and HP15_1842 overlap by 8 nucleotides HP15_1842 and HP15_1843 are separated by 13 nucleotides
HP15_1840: HP15_1840 - patatin, at 1,939,587 to 1,940,801
_1840
HP15_1841: HP15_1841 - conserved hypothetical protein, secreted, at 1,940,807 to 1,941,721
_1841
HP15_1842: HP15_1842 - hydrolase, alpha/beta fold family, at 1,941,714 to 1,942,664
_1842
HP15_1843: HP15_1843 - type IV pilus assembly PilZ, at 1,942,678 to 1,942,950
_1843
Position (kb)
1940
1941
1942 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1939.908 kb on + strand, within HP15_1840 at 1940.031 kb on - strand, within HP15_1840 at 1940.060 kb on + strand, within HP15_1840 at 1940.173 kb on + strand, within HP15_1840 at 1940.186 kb on - strand, within HP15_1840 at 1940.260 kb on + strand, within HP15_1840 at 1940.456 kb on + strand, within HP15_1840 at 1940.478 kb on - strand, within HP15_1840 at 1940.525 kb on - strand, within HP15_1840 at 1940.598 kb on + strand, within HP15_1840 at 1940.612 kb on - strand, within HP15_1840 at 1940.612 kb on - strand, within HP15_1840 at 1940.636 kb on - strand, within HP15_1840 at 1940.636 kb on - strand, within HP15_1840 at 1940.663 kb on - strand, within HP15_1840 at 1940.786 kb on + strand at 1940.916 kb on + strand, within HP15_1841 at 1941.041 kb on + strand, within HP15_1841 at 1941.099 kb on - strand, within HP15_1841 at 1941.265 kb on + strand, within HP15_1841 at 1941.273 kb on - strand, within HP15_1841 at 1941.500 kb on + strand, within HP15_1841 at 1941.551 kb on - strand, within HP15_1841 at 1941.551 kb on - strand, within HP15_1841 at 1941.572 kb on - strand, within HP15_1841 at 1941.618 kb on + strand, within HP15_1841 at 1941.618 kb on + strand, within HP15_1841 at 1941.643 kb on - strand at 1941.653 kb on - strand at 1941.671 kb on + strand at 1941.695 kb on - strand at 1941.799 kb on + strand at 1941.813 kb on - strand, within HP15_1842 at 1941.982 kb on + strand, within HP15_1842 at 1941.982 kb on + strand, within HP15_1842 at 1942.024 kb on - strand, within HP15_1842 at 1942.171 kb on + strand, within HP15_1842 at 1942.198 kb on - strand, within HP15_1842 at 1942.267 kb on - strand, within HP15_1842 at 1942.414 kb on + strand, within HP15_1842 at 1942.423 kb on + strand, within HP15_1842 at 1942.431 kb on - strand, within HP15_1842 at 1942.468 kb on - strand, within HP15_1842 at 1942.474 kb on - strand, within HP15_1842 at 1942.609 kb on - strand at 1942.670 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate remove 1,939,908 + HP15_1840 0.26 +1.7 1,940,031 - HP15_1840 0.37 -0.5 1,940,060 + HP15_1840 0.39 +0.2 1,940,173 + HP15_1840 0.48 +1.1 1,940,186 - HP15_1840 0.49 +2.7 1,940,260 + HP15_1840 0.55 +0.1 1,940,456 + HP15_1840 0.72 +1.2 1,940,478 - HP15_1840 0.73 -0.0 1,940,525 - HP15_1840 0.77 +0.3 1,940,598 + HP15_1840 0.83 -1.0 1,940,612 - HP15_1840 0.84 +1.3 1,940,612 - HP15_1840 0.84 -0.6 1,940,636 - HP15_1840 0.86 -0.1 1,940,636 - HP15_1840 0.86 -0.5 1,940,663 - HP15_1840 0.89 -0.1 1,940,786 + +1.3 1,940,916 + HP15_1841 0.12 -0.7 1,941,041 + HP15_1841 0.26 -1.8 1,941,099 - HP15_1841 0.32 +0.1 1,941,265 + HP15_1841 0.50 -1.0 1,941,273 - HP15_1841 0.51 -1.3 1,941,500 + HP15_1841 0.76 -2.1 1,941,551 - HP15_1841 0.81 -0.7 1,941,551 - HP15_1841 0.81 -0.5 1,941,572 - HP15_1841 0.84 +1.7 1,941,618 + HP15_1841 0.89 +0.2 1,941,618 + HP15_1841 0.89 -0.2 1,941,643 - -1.0 1,941,653 - -0.4 1,941,671 + -0.0 1,941,695 - +1.4 1,941,799 + -0.8 1,941,813 - HP15_1842 0.10 -0.3 1,941,982 + HP15_1842 0.28 +1.6 1,941,982 + HP15_1842 0.28 +0.1 1,942,024 - HP15_1842 0.33 -0.1 1,942,171 + HP15_1842 0.48 +0.1 1,942,198 - HP15_1842 0.51 -1.0 1,942,267 - HP15_1842 0.58 -0.3 1,942,414 + HP15_1842 0.74 +0.3 1,942,423 + HP15_1842 0.75 +1.0 1,942,431 - HP15_1842 0.75 -0.1 1,942,468 - HP15_1842 0.79 -0.2 1,942,474 - HP15_1842 0.80 +0.7 1,942,609 - -0.2 1,942,670 - -0.2
Or see this region's nucleotide sequence