Strain Fitness in Marinobacter adhaerens HP15 around HP15_1841

Experiment: succinate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1840 and HP15_1841 are separated by 5 nucleotidesHP15_1841 and HP15_1842 overlap by 8 nucleotidesHP15_1842 and HP15_1843 are separated by 13 nucleotides HP15_1840: HP15_1840 - patatin, at 1,939,587 to 1,940,801 _1840 HP15_1841: HP15_1841 - conserved hypothetical protein, secreted, at 1,940,807 to 1,941,721 _1841 HP15_1842: HP15_1842 - hydrolase, alpha/beta fold family, at 1,941,714 to 1,942,664 _1842 HP15_1843: HP15_1843 - type IV pilus assembly PilZ, at 1,942,678 to 1,942,950 _1843 Position (kb) 1940 1941 1942Strain fitness (log2 ratio) -2 -1 0 1 2at 1939.908 kb on + strand, within HP15_1840at 1940.031 kb on - strand, within HP15_1840at 1940.060 kb on + strand, within HP15_1840at 1940.173 kb on + strand, within HP15_1840at 1940.186 kb on - strand, within HP15_1840at 1940.260 kb on + strand, within HP15_1840at 1940.456 kb on + strand, within HP15_1840at 1940.478 kb on - strand, within HP15_1840at 1940.525 kb on - strand, within HP15_1840at 1940.598 kb on + strand, within HP15_1840at 1940.612 kb on - strand, within HP15_1840at 1940.612 kb on - strand, within HP15_1840at 1940.636 kb on - strand, within HP15_1840at 1940.636 kb on - strand, within HP15_1840at 1940.663 kb on - strand, within HP15_1840at 1940.786 kb on + strandat 1940.916 kb on + strand, within HP15_1841at 1941.041 kb on + strand, within HP15_1841at 1941.099 kb on - strand, within HP15_1841at 1941.265 kb on + strand, within HP15_1841at 1941.273 kb on - strand, within HP15_1841at 1941.500 kb on + strand, within HP15_1841at 1941.551 kb on - strand, within HP15_1841at 1941.551 kb on - strand, within HP15_1841at 1941.572 kb on - strand, within HP15_1841at 1941.618 kb on + strand, within HP15_1841at 1941.618 kb on + strand, within HP15_1841at 1941.643 kb on - strandat 1941.653 kb on - strandat 1941.671 kb on + strandat 1941.695 kb on - strandat 1941.799 kb on + strandat 1941.813 kb on - strand, within HP15_1842at 1941.982 kb on + strand, within HP15_1842at 1941.982 kb on + strand, within HP15_1842at 1942.024 kb on - strand, within HP15_1842at 1942.171 kb on + strand, within HP15_1842at 1942.198 kb on - strand, within HP15_1842at 1942.267 kb on - strand, within HP15_1842at 1942.414 kb on + strand, within HP15_1842at 1942.423 kb on + strand, within HP15_1842at 1942.431 kb on - strand, within HP15_1842at 1942.468 kb on - strand, within HP15_1842at 1942.474 kb on - strand, within HP15_1842at 1942.609 kb on - strandat 1942.670 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate
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1,939,908 + HP15_1840 0.26 +1.7
1,940,031 - HP15_1840 0.37 -0.5
1,940,060 + HP15_1840 0.39 +0.2
1,940,173 + HP15_1840 0.48 +1.1
1,940,186 - HP15_1840 0.49 +2.7
1,940,260 + HP15_1840 0.55 +0.1
1,940,456 + HP15_1840 0.72 +1.2
1,940,478 - HP15_1840 0.73 -0.0
1,940,525 - HP15_1840 0.77 +0.3
1,940,598 + HP15_1840 0.83 -1.0
1,940,612 - HP15_1840 0.84 +1.3
1,940,612 - HP15_1840 0.84 -0.6
1,940,636 - HP15_1840 0.86 -0.1
1,940,636 - HP15_1840 0.86 -0.5
1,940,663 - HP15_1840 0.89 -0.1
1,940,786 + +1.3
1,940,916 + HP15_1841 0.12 -0.7
1,941,041 + HP15_1841 0.26 -1.8
1,941,099 - HP15_1841 0.32 +0.1
1,941,265 + HP15_1841 0.50 -1.0
1,941,273 - HP15_1841 0.51 -1.3
1,941,500 + HP15_1841 0.76 -2.1
1,941,551 - HP15_1841 0.81 -0.7
1,941,551 - HP15_1841 0.81 -0.5
1,941,572 - HP15_1841 0.84 +1.7
1,941,618 + HP15_1841 0.89 +0.2
1,941,618 + HP15_1841 0.89 -0.2
1,941,643 - -1.0
1,941,653 - -0.4
1,941,671 + -0.0
1,941,695 - +1.4
1,941,799 + -0.8
1,941,813 - HP15_1842 0.10 -0.3
1,941,982 + HP15_1842 0.28 +1.6
1,941,982 + HP15_1842 0.28 +0.1
1,942,024 - HP15_1842 0.33 -0.1
1,942,171 + HP15_1842 0.48 +0.1
1,942,198 - HP15_1842 0.51 -1.0
1,942,267 - HP15_1842 0.58 -0.3
1,942,414 + HP15_1842 0.74 +0.3
1,942,423 + HP15_1842 0.75 +1.0
1,942,431 - HP15_1842 0.75 -0.1
1,942,468 - HP15_1842 0.79 -0.2
1,942,474 - HP15_1842 0.80 +0.7
1,942,609 - -0.2
1,942,670 - -0.2

Or see this region's nucleotide sequence