Experiment: succinate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1767 and HP15_1768 are separated by 33 nucleotides HP15_1768 and HP15_1769 are separated by 41 nucleotides HP15_1769 and HP15_1770 overlap by 4 nucleotides HP15_1770 and HP15_1771 overlap by 4 nucleotides
HP15_1767: HP15_1767 - hypothetical protein, at 1,866,024 to 1,866,311
_1767
HP15_1768: HP15_1768 - delta 9 acyl-lipid fatty acid desaturase, at 1,866,345 to 1,866,881
_1768
HP15_1769: HP15_1769 - transcriptional regulator-related protein, at 1,866,923 to 1,867,345
_1769
HP15_1770: HP15_1770 - short-chain dehydrogenase/reductase SDR, at 1,867,342 to 1,868,142
_1770
HP15_1771: HP15_1771 - dehydrogenase, at 1,868,139 to 1,869,404
_1771
Position (kb)
1866
1867
1868 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1866.058 kb on - strand, within HP15_1767 at 1866.114 kb on + strand, within HP15_1767 at 1866.126 kb on + strand, within HP15_1767 at 1866.179 kb on + strand, within HP15_1767 at 1866.229 kb on + strand, within HP15_1767 at 1866.247 kb on - strand, within HP15_1767 at 1866.253 kb on + strand, within HP15_1767 at 1866.401 kb on - strand, within HP15_1768 at 1866.445 kb on - strand, within HP15_1768 at 1866.508 kb on + strand, within HP15_1768 at 1866.619 kb on - strand, within HP15_1768 at 1866.664 kb on + strand, within HP15_1768 at 1866.716 kb on + strand, within HP15_1768 at 1866.772 kb on + strand, within HP15_1768 at 1866.772 kb on + strand, within HP15_1768 at 1866.774 kb on - strand, within HP15_1768 at 1866.799 kb on - strand, within HP15_1768 at 1866.809 kb on + strand, within HP15_1768 at 1866.862 kb on - strand at 1867.035 kb on + strand, within HP15_1769 at 1867.036 kb on - strand, within HP15_1769 at 1867.155 kb on + strand, within HP15_1769 at 1867.155 kb on + strand, within HP15_1769 at 1867.158 kb on - strand, within HP15_1769 at 1867.158 kb on - strand, within HP15_1769 at 1867.163 kb on - strand, within HP15_1769 at 1867.163 kb on - strand, within HP15_1769 at 1867.218 kb on - strand, within HP15_1769 at 1867.535 kb on + strand, within HP15_1770 at 1867.582 kb on + strand, within HP15_1770 at 1867.638 kb on + strand, within HP15_1770 at 1867.673 kb on - strand, within HP15_1770 at 1867.674 kb on - strand, within HP15_1770 at 1867.703 kb on + strand, within HP15_1770 at 1867.734 kb on + strand, within HP15_1770 at 1868.232 kb on - strand at 1868.300 kb on - strand, within HP15_1771 at 1868.314 kb on - strand, within HP15_1771 at 1868.314 kb on - strand, within HP15_1771
Per-strain Table
Position Strand Gene LocusTag Fraction succinate remove 1,866,058 - HP15_1767 0.12 +1.4 1,866,114 + HP15_1767 0.31 +1.4 1,866,126 + HP15_1767 0.35 -0.3 1,866,179 + HP15_1767 0.54 +1.2 1,866,229 + HP15_1767 0.71 +1.2 1,866,247 - HP15_1767 0.77 -0.3 1,866,253 + HP15_1767 0.80 -0.6 1,866,401 - HP15_1768 0.10 +0.1 1,866,445 - HP15_1768 0.19 -0.8 1,866,508 + HP15_1768 0.30 +1.6 1,866,619 - HP15_1768 0.51 +1.4 1,866,664 + HP15_1768 0.59 -1.2 1,866,716 + HP15_1768 0.69 -0.1 1,866,772 + HP15_1768 0.80 -1.0 1,866,772 + HP15_1768 0.80 -0.1 1,866,774 - HP15_1768 0.80 +1.3 1,866,799 - HP15_1768 0.85 +1.6 1,866,809 + HP15_1768 0.86 -0.0 1,866,862 - -1.9 1,867,035 + HP15_1769 0.26 +1.2 1,867,036 - HP15_1769 0.27 -0.2 1,867,155 + HP15_1769 0.55 +1.4 1,867,155 + HP15_1769 0.55 -0.4 1,867,158 - HP15_1769 0.56 +1.4 1,867,158 - HP15_1769 0.56 +2.5 1,867,163 - HP15_1769 0.57 +1.3 1,867,163 - HP15_1769 0.57 +1.1 1,867,218 - HP15_1769 0.70 +0.5 1,867,535 + HP15_1770 0.24 +1.6 1,867,582 + HP15_1770 0.30 -0.7 1,867,638 + HP15_1770 0.37 +1.7 1,867,673 - HP15_1770 0.41 +0.6 1,867,674 - HP15_1770 0.41 +1.5 1,867,703 + HP15_1770 0.45 +0.6 1,867,734 + HP15_1770 0.49 +0.6 1,868,232 - +0.7 1,868,300 - HP15_1771 0.13 -0.2 1,868,314 - HP15_1771 0.14 -0.3 1,868,314 - HP15_1771 0.14 -1.5
Or see this region's nucleotide sequence