Experiment: succinate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1345 and HP15_1346 are separated by 3 nucleotides HP15_1346 and HP15_1347 are separated by 9 nucleotides HP15_1347 and HP15_1348 are separated by 199 nucleotides
HP15_1345: HP15_1345 - sulphate ABC transporter, permease protein CysT, at 1,413,113 to 1,413,985
_1345
HP15_1346: HP15_1346 - sulfate ABC transporter, inner membrane subunit CysW, at 1,413,989 to 1,414,819
_1346
HP15_1347: HP15_1347 - sulfate/thiosulfate transporter subunit, at 1,414,829 to 1,415,917
_1347
HP15_1348: HP15_1348 - major facilitator family transporter, at 1,416,117 to 1,417,361
_1348
Position (kb)
1414
1415
1416 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1413.833 kb on - strand, within HP15_1345 at 1413.985 kb on + strand at 1413.988 kb on - strand at 1413.988 kb on - strand at 1413.988 kb on - strand at 1413.993 kb on - strand at 1414.131 kb on - strand, within HP15_1346 at 1414.201 kb on + strand, within HP15_1346 at 1414.209 kb on - strand, within HP15_1346 at 1414.209 kb on - strand, within HP15_1346 at 1414.243 kb on - strand, within HP15_1346 at 1414.325 kb on - strand, within HP15_1346 at 1414.408 kb on - strand, within HP15_1346 at 1414.596 kb on - strand, within HP15_1346 at 1414.612 kb on + strand, within HP15_1346 at 1414.630 kb on + strand, within HP15_1346 at 1414.643 kb on - strand, within HP15_1346 at 1414.700 kb on - strand, within HP15_1346 at 1414.712 kb on + strand, within HP15_1346 at 1414.712 kb on + strand, within HP15_1346 at 1414.768 kb on + strand at 1414.870 kb on + strand at 1414.870 kb on + strand at 1414.878 kb on - strand at 1414.925 kb on + strand at 1414.959 kb on - strand, within HP15_1347 at 1415.191 kb on + strand, within HP15_1347 at 1415.221 kb on + strand, within HP15_1347 at 1415.221 kb on + strand, within HP15_1347 at 1415.229 kb on - strand, within HP15_1347 at 1415.229 kb on - strand, within HP15_1347 at 1415.236 kb on + strand, within HP15_1347 at 1415.244 kb on - strand, within HP15_1347 at 1415.244 kb on - strand, within HP15_1347 at 1415.255 kb on - strand, within HP15_1347 at 1415.259 kb on + strand, within HP15_1347 at 1415.376 kb on + strand, within HP15_1347 at 1415.419 kb on + strand, within HP15_1347 at 1415.423 kb on - strand, within HP15_1347 at 1415.497 kb on + strand, within HP15_1347 at 1415.553 kb on - strand, within HP15_1347 at 1415.553 kb on - strand, within HP15_1347 at 1415.649 kb on - strand, within HP15_1347 at 1415.654 kb on - strand, within HP15_1347 at 1415.667 kb on + strand, within HP15_1347 at 1415.685 kb on - strand, within HP15_1347 at 1415.718 kb on + strand, within HP15_1347 at 1415.733 kb on + strand, within HP15_1347 at 1415.790 kb on - strand, within HP15_1347 at 1416.298 kb on + strand, within HP15_1348 at 1416.306 kb on - strand, within HP15_1348 at 1416.338 kb on - strand, within HP15_1348 at 1416.420 kb on - strand, within HP15_1348 at 1416.425 kb on - strand, within HP15_1348 at 1416.601 kb on + strand, within HP15_1348 at 1416.698 kb on + strand, within HP15_1348 at 1416.701 kb on - strand, within HP15_1348 at 1416.703 kb on + strand, within HP15_1348 at 1416.703 kb on + strand, within HP15_1348 at 1416.703 kb on + strand, within HP15_1348 at 1416.703 kb on + strand, within HP15_1348 at 1416.711 kb on - strand, within HP15_1348 at 1416.711 kb on - strand, within HP15_1348 at 1416.711 kb on - strand, within HP15_1348 at 1416.790 kb on + strand, within HP15_1348 at 1416.795 kb on - strand, within HP15_1348 at 1416.868 kb on - strand, within HP15_1348 at 1416.892 kb on - strand, within HP15_1348
Per-strain Table
Position Strand Gene LocusTag Fraction succinate remove 1,413,833 - HP15_1345 0.82 +0.1 1,413,985 + +1.8 1,413,988 - -0.9 1,413,988 - +1.5 1,413,988 - +1.0 1,413,993 - -0.6 1,414,131 - HP15_1346 0.17 +0.2 1,414,201 + HP15_1346 0.26 +0.5 1,414,209 - HP15_1346 0.26 -0.5 1,414,209 - HP15_1346 0.26 -0.9 1,414,243 - HP15_1346 0.31 -1.9 1,414,325 - HP15_1346 0.40 +1.3 1,414,408 - HP15_1346 0.50 -0.8 1,414,596 - HP15_1346 0.73 -0.7 1,414,612 + HP15_1346 0.75 -0.4 1,414,630 + HP15_1346 0.77 -1.5 1,414,643 - HP15_1346 0.79 -0.1 1,414,700 - HP15_1346 0.86 -0.2 1,414,712 + HP15_1346 0.87 -0.5 1,414,712 + HP15_1346 0.87 -0.8 1,414,768 + +0.5 1,414,870 + -1.2 1,414,870 + -0.4 1,414,878 - -0.3 1,414,925 + -0.9 1,414,959 - HP15_1347 0.12 -1.0 1,415,191 + HP15_1347 0.33 +1.3 1,415,221 + HP15_1347 0.36 -1.2 1,415,221 + HP15_1347 0.36 -1.1 1,415,229 - HP15_1347 0.37 -0.3 1,415,229 - HP15_1347 0.37 +0.2 1,415,236 + HP15_1347 0.37 -1.7 1,415,244 - HP15_1347 0.38 +2.2 1,415,244 - HP15_1347 0.38 -0.9 1,415,255 - HP15_1347 0.39 +0.5 1,415,259 + HP15_1347 0.39 -0.4 1,415,376 + HP15_1347 0.50 +0.5 1,415,419 + HP15_1347 0.54 -1.0 1,415,423 - HP15_1347 0.55 -0.0 1,415,497 + HP15_1347 0.61 +1.7 1,415,553 - HP15_1347 0.66 -0.8 1,415,553 - HP15_1347 0.66 -2.9 1,415,649 - HP15_1347 0.75 -0.3 1,415,654 - HP15_1347 0.76 +1.1 1,415,667 + HP15_1347 0.77 +1.8 1,415,685 - HP15_1347 0.79 -1.1 1,415,718 + HP15_1347 0.82 -0.7 1,415,733 + HP15_1347 0.83 -0.4 1,415,790 - HP15_1347 0.88 -0.4 1,416,298 + HP15_1348 0.15 -0.4 1,416,306 - HP15_1348 0.15 +1.5 1,416,338 - HP15_1348 0.18 -0.5 1,416,420 - HP15_1348 0.24 +0.4 1,416,425 - HP15_1348 0.25 +1.7 1,416,601 + HP15_1348 0.39 -0.4 1,416,698 + HP15_1348 0.47 +0.8 1,416,701 - HP15_1348 0.47 -0.6 1,416,703 + HP15_1348 0.47 +1.0 1,416,703 + HP15_1348 0.47 -0.9 1,416,703 + HP15_1348 0.47 -1.2 1,416,703 + HP15_1348 0.47 -0.2 1,416,711 - HP15_1348 0.48 -0.8 1,416,711 - HP15_1348 0.48 +1.5 1,416,711 - HP15_1348 0.48 +0.1 1,416,790 + HP15_1348 0.54 -0.3 1,416,795 - HP15_1348 0.54 +1.5 1,416,868 - HP15_1348 0.60 -0.4 1,416,892 - HP15_1348 0.62 +1.5
Or see this region's nucleotide sequence