Strain Fitness in Dechlorosoma suillum PS around Dsui_2460

Experiment: rich media with sodium chlorite 0.16 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2458 and Dsui_2459 are separated by 16 nucleotidesDsui_2459 and Dsui_2460 overlap by 8 nucleotidesDsui_2460 and Dsui_2461 overlap by 4 nucleotidesDsui_2461 and Dsui_2462 are separated by 30 nucleotides Dsui_2458: Dsui_2458 - signal peptidase I, at 2,616,862 to 2,617,650 _2458 Dsui_2459: Dsui_2459 - hypothetical protein, at 2,617,667 to 2,618,038 _2459 Dsui_2460: Dsui_2460 - ribonuclease III, at 2,618,031 to 2,618,723 _2460 Dsui_2461: Dsui_2461 - GTP-binding protein Era, at 2,618,720 to 2,619,613 _2461 Dsui_2462: Dsui_2462 - DNA repair protein RecO, at 2,619,644 to 2,620,357 _2462 Position (kb) 2618 2619Strain fitness (log2 ratio) -1 0 1at 2617.649 kb on + strandat 2617.670 kb on - strandat 2617.873 kb on + strand, within Dsui_2459at 2617.887 kb on + strand, within Dsui_2459at 2618.023 kb on + strandat 2618.023 kb on + strandat 2618.023 kb on + strandat 2618.031 kb on - strandat 2618.031 kb on - strandat 2618.031 kb on - strandat 2618.031 kb on - strandat 2619.597 kb on + strandat 2619.634 kb on + strandat 2619.659 kb on + strandat 2619.683 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
remove
2,617,649 + +0.2
2,617,670 - +0.9
2,617,873 + Dsui_2459 0.55 +0.1
2,617,887 + Dsui_2459 0.59 +0.7
2,618,023 + -0.0
2,618,023 + -0.3
2,618,023 + -0.2
2,618,031 - -0.3
2,618,031 - +0.3
2,618,031 - -0.9
2,618,031 - +0.9
2,619,597 + +0.2
2,619,634 + +0.0
2,619,659 + -0.0
2,619,683 + +0.1

Or see this region's nucleotide sequence