Strain Fitness in Dechlorosoma suillum PS around Dsui_1898

Experiment: rich media with sodium chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1896 and Dsui_1897 are separated by 1 nucleotidesDsui_1897 and Dsui_1898 overlap by 13 nucleotidesDsui_1898 and Dsui_1899 are separated by 192 nucleotides Dsui_1896: Dsui_1896 - arabinose efflux permease family protein, at 1,995,967 to 1,997,220 _1896 Dsui_1897: Dsui_1897 - hypothetical protein, at 1,997,222 to 1,997,356 _1897 Dsui_1898: Dsui_1898 - putative signal transduction protein, at 1,997,344 to 1,998,252 _1898 Dsui_1899: Dsui_1899 - rRNA methylase, putative, group 3, at 1,998,445 to 1,999,206 _1899 Position (kb) 1997 1998 1999Strain fitness (log2 ratio) -1 0 1at 1996.362 kb on - strandat 1996.420 kb on + strand, within Dsui_1896at 1996.420 kb on + strand, within Dsui_1896at 1996.428 kb on - strandat 1996.448 kb on + strand, within Dsui_1896at 1996.477 kb on + strand, within Dsui_1896at 1996.530 kb on - strand, within Dsui_1896at 1996.552 kb on + strand, within Dsui_1896at 1996.552 kb on + strand, within Dsui_1896at 1996.862 kb on - strand, within Dsui_1896at 1996.931 kb on - strand, within Dsui_1896at 1997.055 kb on - strand, within Dsui_1896at 1997.113 kb on - strandat 1997.285 kb on - strandat 1997.309 kb on - strand, within Dsui_1897at 1997.564 kb on + strand, within Dsui_1898at 1997.591 kb on + strand, within Dsui_1898at 1997.591 kb on - strand, within Dsui_1898at 1997.638 kb on + strand, within Dsui_1898at 1997.645 kb on - strand, within Dsui_1898at 1997.650 kb on + strand, within Dsui_1898at 1997.658 kb on - strand, within Dsui_1898at 1997.694 kb on - strand, within Dsui_1898at 1997.705 kb on + strand, within Dsui_1898at 1997.804 kb on - strand, within Dsui_1898at 1997.934 kb on + strand, within Dsui_1898at 1997.942 kb on - strand, within Dsui_1898at 1997.942 kb on - strand, within Dsui_1898at 1998.039 kb on + strand, within Dsui_1898at 1998.039 kb on + strandat 1998.047 kb on - strand, within Dsui_1898at 1998.047 kb on - strand, within Dsui_1898at 1998.064 kb on - strand, within Dsui_1898at 1998.110 kb on - strand, within Dsui_1898at 1998.207 kb on - strandat 1998.208 kb on + strandat 1998.216 kb on - strandat 1998.334 kb on - strandat 1998.455 kb on - strandat 1998.589 kb on + strand, within Dsui_1899at 1998.667 kb on - strand, within Dsui_1899at 1998.803 kb on - strand, within Dsui_1899at 1998.873 kb on + strand, within Dsui_1899at 1998.873 kb on + strand, within Dsui_1899at 1998.881 kb on - strandat 1998.881 kb on - strandat 1998.937 kb on + strand, within Dsui_1899at 1998.959 kb on + strand, within Dsui_1899at 1999.014 kb on + strand, within Dsui_1899at 1999.014 kb on + strand, within Dsui_1899at 1999.017 kb on + strand, within Dsui_1899at 1999.017 kb on + strand, within Dsui_1899at 1999.017 kb on + strand, within Dsui_1899at 1999.025 kb on - strand, within Dsui_1899

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
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1,996,362 - +0.9
1,996,420 + Dsui_1896 0.36 -0.9
1,996,420 + Dsui_1896 0.36 -0.1
1,996,428 - -0.4
1,996,448 + Dsui_1896 0.38 +0.8
1,996,477 + Dsui_1896 0.41 +0.1
1,996,530 - Dsui_1896 0.45 -0.3
1,996,552 + Dsui_1896 0.47 -0.3
1,996,552 + Dsui_1896 0.47 +0.1
1,996,862 - Dsui_1896 0.71 +0.5
1,996,931 - Dsui_1896 0.77 +0.1
1,997,055 - Dsui_1896 0.87 +0.7
1,997,113 - +0.3
1,997,285 - -0.1
1,997,309 - Dsui_1897 0.64 -1.4
1,997,564 + Dsui_1898 0.24 -0.6
1,997,591 + Dsui_1898 0.27 -0.0
1,997,591 - Dsui_1898 0.27 -0.3
1,997,638 + Dsui_1898 0.32 +0.0
1,997,645 - Dsui_1898 0.33 -0.7
1,997,650 + Dsui_1898 0.34 +0.7
1,997,658 - Dsui_1898 0.35 +0.2
1,997,694 - Dsui_1898 0.39 -0.3
1,997,705 + Dsui_1898 0.40 +0.1
1,997,804 - Dsui_1898 0.51 +0.1
1,997,934 + Dsui_1898 0.65 +0.9
1,997,942 - Dsui_1898 0.66 -0.1
1,997,942 - Dsui_1898 0.66 +0.1
1,998,039 + Dsui_1898 0.76 -0.1
1,998,039 + +0.1
1,998,047 - Dsui_1898 0.77 -0.5
1,998,047 - Dsui_1898 0.77 -0.2
1,998,064 - Dsui_1898 0.79 +1.3
1,998,110 - Dsui_1898 0.84 -0.5
1,998,207 - +0.9
1,998,208 + +0.3
1,998,216 - -0.1
1,998,334 - -0.5
1,998,455 - -1.1
1,998,589 + Dsui_1899 0.19 -0.6
1,998,667 - Dsui_1899 0.29 +0.6
1,998,803 - Dsui_1899 0.47 +0.6
1,998,873 + Dsui_1899 0.56 -0.4
1,998,873 + Dsui_1899 0.56 +0.3
1,998,881 - -0.9
1,998,881 - -0.7
1,998,937 + Dsui_1899 0.65 +0.1
1,998,959 + Dsui_1899 0.67 -0.1
1,999,014 + Dsui_1899 0.75 -0.2
1,999,014 + Dsui_1899 0.75 -0.1
1,999,017 + Dsui_1899 0.75 +0.2
1,999,017 + Dsui_1899 0.75 -0.2
1,999,017 + Dsui_1899 0.75 -0.6
1,999,025 - Dsui_1899 0.76 +0.0

Or see this region's nucleotide sequence