Experiment: rich media with sodium chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1896 and Dsui_1897 are separated by 1 nucleotides Dsui_1897 and Dsui_1898 overlap by 13 nucleotides Dsui_1898 and Dsui_1899 are separated by 192 nucleotides
Dsui_1896: Dsui_1896 - arabinose efflux permease family protein, at 1,995,967 to 1,997,220
_1896
Dsui_1897: Dsui_1897 - hypothetical protein, at 1,997,222 to 1,997,356
_1897
Dsui_1898: Dsui_1898 - putative signal transduction protein, at 1,997,344 to 1,998,252
_1898
Dsui_1899: Dsui_1899 - rRNA methylase, putative, group 3, at 1,998,445 to 1,999,206
_1899
Position (kb)
1997
1998
1999 Strain fitness (log2 ratio)
-1
0
1 at 1996.362 kb on - strand at 1996.420 kb on + strand, within Dsui_1896 at 1996.420 kb on + strand, within Dsui_1896 at 1996.428 kb on - strand at 1996.448 kb on + strand, within Dsui_1896 at 1996.477 kb on + strand, within Dsui_1896 at 1996.530 kb on - strand, within Dsui_1896 at 1996.552 kb on + strand, within Dsui_1896 at 1996.552 kb on + strand, within Dsui_1896 at 1996.862 kb on - strand, within Dsui_1896 at 1996.931 kb on - strand, within Dsui_1896 at 1997.055 kb on - strand, within Dsui_1896 at 1997.113 kb on - strand at 1997.285 kb on - strand at 1997.309 kb on - strand, within Dsui_1897 at 1997.564 kb on + strand, within Dsui_1898 at 1997.591 kb on + strand, within Dsui_1898 at 1997.591 kb on - strand, within Dsui_1898 at 1997.638 kb on + strand, within Dsui_1898 at 1997.645 kb on - strand, within Dsui_1898 at 1997.650 kb on + strand, within Dsui_1898 at 1997.658 kb on - strand, within Dsui_1898 at 1997.694 kb on - strand, within Dsui_1898 at 1997.705 kb on + strand, within Dsui_1898 at 1997.804 kb on - strand, within Dsui_1898 at 1997.934 kb on + strand, within Dsui_1898 at 1997.942 kb on - strand, within Dsui_1898 at 1997.942 kb on - strand, within Dsui_1898 at 1998.039 kb on + strand, within Dsui_1898 at 1998.039 kb on + strand at 1998.047 kb on - strand, within Dsui_1898 at 1998.047 kb on - strand, within Dsui_1898 at 1998.064 kb on - strand, within Dsui_1898 at 1998.110 kb on - strand, within Dsui_1898 at 1998.207 kb on - strand at 1998.208 kb on + strand at 1998.216 kb on - strand at 1998.334 kb on - strand at 1998.455 kb on - strand at 1998.589 kb on + strand, within Dsui_1899 at 1998.667 kb on - strand, within Dsui_1899 at 1998.803 kb on - strand, within Dsui_1899 at 1998.873 kb on + strand, within Dsui_1899 at 1998.873 kb on + strand, within Dsui_1899 at 1998.881 kb on - strand at 1998.881 kb on - strand at 1998.937 kb on + strand, within Dsui_1899 at 1998.959 kb on + strand, within Dsui_1899 at 1999.014 kb on + strand, within Dsui_1899 at 1999.014 kb on + strand, within Dsui_1899 at 1999.017 kb on + strand, within Dsui_1899 at 1999.017 kb on + strand, within Dsui_1899 at 1999.017 kb on + strand, within Dsui_1899 at 1999.025 kb on - strand, within Dsui_1899
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM remove 1,996,362 - +0.9 1,996,420 + Dsui_1896 0.36 -0.9 1,996,420 + Dsui_1896 0.36 -0.1 1,996,428 - -0.4 1,996,448 + Dsui_1896 0.38 +0.8 1,996,477 + Dsui_1896 0.41 +0.1 1,996,530 - Dsui_1896 0.45 -0.3 1,996,552 + Dsui_1896 0.47 -0.3 1,996,552 + Dsui_1896 0.47 +0.1 1,996,862 - Dsui_1896 0.71 +0.5 1,996,931 - Dsui_1896 0.77 +0.1 1,997,055 - Dsui_1896 0.87 +0.7 1,997,113 - +0.3 1,997,285 - -0.1 1,997,309 - Dsui_1897 0.64 -1.4 1,997,564 + Dsui_1898 0.24 -0.6 1,997,591 + Dsui_1898 0.27 -0.0 1,997,591 - Dsui_1898 0.27 -0.3 1,997,638 + Dsui_1898 0.32 +0.0 1,997,645 - Dsui_1898 0.33 -0.7 1,997,650 + Dsui_1898 0.34 +0.7 1,997,658 - Dsui_1898 0.35 +0.2 1,997,694 - Dsui_1898 0.39 -0.3 1,997,705 + Dsui_1898 0.40 +0.1 1,997,804 - Dsui_1898 0.51 +0.1 1,997,934 + Dsui_1898 0.65 +0.9 1,997,942 - Dsui_1898 0.66 -0.1 1,997,942 - Dsui_1898 0.66 +0.1 1,998,039 + Dsui_1898 0.76 -0.1 1,998,039 + +0.1 1,998,047 - Dsui_1898 0.77 -0.5 1,998,047 - Dsui_1898 0.77 -0.2 1,998,064 - Dsui_1898 0.79 +1.3 1,998,110 - Dsui_1898 0.84 -0.5 1,998,207 - +0.9 1,998,208 + +0.3 1,998,216 - -0.1 1,998,334 - -0.5 1,998,455 - -1.1 1,998,589 + Dsui_1899 0.19 -0.6 1,998,667 - Dsui_1899 0.29 +0.6 1,998,803 - Dsui_1899 0.47 +0.6 1,998,873 + Dsui_1899 0.56 -0.4 1,998,873 + Dsui_1899 0.56 +0.3 1,998,881 - -0.9 1,998,881 - -0.7 1,998,937 + Dsui_1899 0.65 +0.1 1,998,959 + Dsui_1899 0.67 -0.1 1,999,014 + Dsui_1899 0.75 -0.2 1,999,014 + Dsui_1899 0.75 -0.1 1,999,017 + Dsui_1899 0.75 +0.2 1,999,017 + Dsui_1899 0.75 -0.2 1,999,017 + Dsui_1899 0.75 -0.6 1,999,025 - Dsui_1899 0.76 +0.0
Or see this region's nucleotide sequence