Experiment: rich media with sodium chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1592 and Dsui_1593 are separated by 333 nucleotides Dsui_1593 and Dsui_1594 are separated by 84 nucleotides Dsui_1594 and Dsui_1595 are separated by 65 nucleotides
Dsui_1592: Dsui_1592 - Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family, at 1,672,278 to 1,673,432
_1592
Dsui_1593: Dsui_1593 - putative TIM-barrel protein, nifR3 family, at 1,673,766 to 1,674,797
_1593
Dsui_1594: Dsui_1594 - Factor for inversion stimulation Fis, transcriptional activator, at 1,674,882 to 1,675,121
_1594
Dsui_1595: Dsui_1595 - phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 1,675,187 to 1,676,752
_1595
Position (kb)
1673
1674
1675 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1673.571 kb on + strand at 1673.605 kb on + strand at 1673.896 kb on + strand, within Dsui_1593 at 1674.012 kb on + strand, within Dsui_1593 at 1674.293 kb on + strand, within Dsui_1593 at 1674.296 kb on + strand, within Dsui_1593 at 1674.314 kb on + strand, within Dsui_1593 at 1674.330 kb on - strand at 1674.394 kb on - strand at 1674.411 kb on - strand at 1674.447 kb on + strand, within Dsui_1593 at 1674.622 kb on - strand, within Dsui_1593 at 1674.724 kb on + strand at 1674.736 kb on - strand at 1674.752 kb on - strand at 1674.812 kb on + strand at 1674.834 kb on + strand at 1675.106 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM remove 1,673,571 + -2.5 1,673,605 + +0.4 1,673,896 + Dsui_1593 0.13 -1.4 1,674,012 + Dsui_1593 0.24 -0.3 1,674,293 + Dsui_1593 0.51 +0.2 1,674,296 + Dsui_1593 0.51 -0.1 1,674,314 + Dsui_1593 0.53 +0.8 1,674,330 - +1.8 1,674,394 - -0.2 1,674,411 - -0.8 1,674,447 + Dsui_1593 0.66 +0.1 1,674,622 - Dsui_1593 0.83 +0.5 1,674,724 + -0.5 1,674,736 - -0.5 1,674,752 - -0.3 1,674,812 + -0.3 1,674,834 + +0.5 1,675,106 - -0.2
Or see this region's nucleotide sequence