Strain Fitness in Dechlorosoma suillum PS around Dsui_1593

Experiment: rich media with sodium chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1592 and Dsui_1593 are separated by 333 nucleotidesDsui_1593 and Dsui_1594 are separated by 84 nucleotidesDsui_1594 and Dsui_1595 are separated by 65 nucleotides Dsui_1592: Dsui_1592 - Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family, at 1,672,278 to 1,673,432 _1592 Dsui_1593: Dsui_1593 - putative TIM-barrel protein, nifR3 family, at 1,673,766 to 1,674,797 _1593 Dsui_1594: Dsui_1594 - Factor for inversion stimulation Fis, transcriptional activator, at 1,674,882 to 1,675,121 _1594 Dsui_1595: Dsui_1595 - phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 1,675,187 to 1,676,752 _1595 Position (kb) 1673 1674 1675Strain fitness (log2 ratio) -2 -1 0 1 2at 1673.571 kb on + strandat 1673.605 kb on + strandat 1673.896 kb on + strand, within Dsui_1593at 1674.012 kb on + strand, within Dsui_1593at 1674.293 kb on + strand, within Dsui_1593at 1674.296 kb on + strand, within Dsui_1593at 1674.314 kb on + strand, within Dsui_1593at 1674.330 kb on - strandat 1674.394 kb on - strandat 1674.411 kb on - strandat 1674.447 kb on + strand, within Dsui_1593at 1674.622 kb on - strand, within Dsui_1593at 1674.724 kb on + strandat 1674.736 kb on - strandat 1674.752 kb on - strandat 1674.812 kb on + strandat 1674.834 kb on + strandat 1675.106 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
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1,673,571 + -2.5
1,673,605 + +0.4
1,673,896 + Dsui_1593 0.13 -1.4
1,674,012 + Dsui_1593 0.24 -0.3
1,674,293 + Dsui_1593 0.51 +0.2
1,674,296 + Dsui_1593 0.51 -0.1
1,674,314 + Dsui_1593 0.53 +0.8
1,674,330 - +1.8
1,674,394 - -0.2
1,674,411 - -0.8
1,674,447 + Dsui_1593 0.66 +0.1
1,674,622 - Dsui_1593 0.83 +0.5
1,674,724 + -0.5
1,674,736 - -0.5
1,674,752 - -0.3
1,674,812 + -0.3
1,674,834 + +0.5
1,675,106 - -0.2

Or see this region's nucleotide sequence