Strain Fitness in Dechlorosoma suillum PS around Dsui_0047

Experiment: rich media with sodium chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0046 and Dsui_0047 are separated by 111 nucleotidesDsui_0047 and Dsui_0048 are separated by 165 nucleotides Dsui_0046: Dsui_0046 - Zn-dependent oligopeptidase, at 41,555 to 43,636 _0046 Dsui_0047: Dsui_0047 - putative integral membrane protein, at 43,748 to 44,518 _0047 Dsui_0048: Dsui_0048 - phosphoribosylaminoimidazole-succinocarboxamide synthase, at 44,684 to 45,622 _0048 Position (kb) 43 44 45Strain fitness (log2 ratio) -1 0 1 2 3at 42.750 kb on + strandat 42.750 kb on + strand, within Dsui_0046at 42.760 kb on + strandat 42.813 kb on - strand, within Dsui_0046at 42.821 kb on + strand, within Dsui_0046at 42.834 kb on - strand, within Dsui_0046at 42.836 kb on + strand, within Dsui_0046at 42.896 kb on + strandat 42.981 kb on + strand, within Dsui_0046at 43.166 kb on - strand, within Dsui_0046at 43.272 kb on - strand, within Dsui_0046at 43.292 kb on - strand, within Dsui_0046at 43.292 kb on - strand, within Dsui_0046at 43.292 kb on - strand, within Dsui_0046at 43.311 kb on - strand, within Dsui_0046at 43.422 kb on + strandat 43.572 kb on - strandat 43.596 kb on - strandat 43.601 kb on - strandat 43.642 kb on + strandat 43.642 kb on + strandat 43.655 kb on - strandat 43.694 kb on + strandat 43.815 kb on - strandat 43.851 kb on - strand, within Dsui_0047at 43.851 kb on - strand, within Dsui_0047at 43.851 kb on - strand, within Dsui_0047at 43.874 kb on - strand, within Dsui_0047at 44.022 kb on - strand, within Dsui_0047at 44.184 kb on - strand, within Dsui_0047at 44.535 kb on + strandat 44.547 kb on + strandat 44.563 kb on + strandat 44.595 kb on + strandat 44.632 kb on - strandat 44.701 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
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42,750 + +2.8
42,750 + Dsui_0046 0.57 +2.2
42,760 + +0.3
42,813 - Dsui_0046 0.60 -0.9
42,821 + Dsui_0046 0.61 +1.3
42,834 - Dsui_0046 0.61 +0.3
42,836 + Dsui_0046 0.62 +0.3
42,896 + +1.8
42,981 + Dsui_0046 0.68 -1.1
43,166 - Dsui_0046 0.77 -0.2
43,272 - Dsui_0046 0.82 +0.1
43,292 - Dsui_0046 0.83 -0.1
43,292 - Dsui_0046 0.83 -0.1
43,292 - Dsui_0046 0.83 +0.3
43,311 - Dsui_0046 0.84 -0.7
43,422 + +1.8
43,572 - -0.5
43,596 - +0.6
43,601 - +1.0
43,642 + -1.2
43,642 + +1.8
43,655 - +0.3
43,694 + +0.7
43,815 - -1.3
43,851 - Dsui_0047 0.13 +0.0
43,851 - Dsui_0047 0.13 +0.7
43,851 - Dsui_0047 0.13 -0.2
43,874 - Dsui_0047 0.16 +0.3
44,022 - Dsui_0047 0.36 +0.5
44,184 - Dsui_0047 0.57 +0.1
44,535 + -0.7
44,547 + +0.3
44,563 + -0.5
44,595 + -1.3
44,632 - -0.4
44,701 - -0.1

Or see this region's nucleotide sequence