Strain Fitness in Shewanella amazonensis SB2B around Sama_0261

Experiment: pyruvate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pyruvate
298,587	-		Sama_0260	0.34	-3.9
298,640	+		Sama_0260	0.37	-4.5
298,640	+		Sama_0260	0.37	-3.7
298,640	+		Sama_0260	0.37	-2.9
298,640	+		Sama_0260	0.37	-2.2
298,640	+		Sama_0260	0.37	-3.7
298,641	-		Sama_0260	0.37	-1.1
298,641	-		Sama_0260	0.37	-2.3
298,641	-		Sama_0260	0.37	-2.3
298,641	-		Sama_0260	0.37	-1.4
298,641	-		Sama_0260	0.37	-1.6
298,641	-		Sama_0260	0.37	-1.4
298,739	+		Sama_0260	0.45	-1.1
298,739	+		Sama_0260	0.45	-2.8
298,739	+		Sama_0260	0.45	-3.1
298,739	+		Sama_0260	0.45	-2.0
298,739	+		Sama_0260	0.45	-3.2
298,739	+		Sama_0260	0.45	-3.3
298,739	+		Sama_0260	0.45	-0.7
298,739	+		Sama_0260	0.45	-1.8
298,740	-		Sama_0260	0.45	-3.3
298,740	-		Sama_0260	0.45	-2.5
298,740	-		Sama_0260	0.45	-1.1
298,740	-		Sama_0260	0.45	-2.7
298,740	-		Sama_0260	0.45	-0.8
298,740	-		Sama_0260	0.45	-4.1
298,740	-		Sama_0260	0.45	-3.6
298,740	-		Sama_0260	0.45	-2.4
298,740	-		Sama_0260	0.45	-1.5
298,740	-		Sama_0260	0.45	-3.4
298,861	+		Sama_0260	0.54	-2.4
298,862	-		Sama_0260	0.54	-1.1
298,862	-		Sama_0260	0.54	-3.5
298,862	-		Sama_0260	0.54	-1.1
298,862	-		Sama_0260	0.54	-2.0
299,025	-		Sama_0260	0.65	-0.7
299,075	+		Sama_0260	0.69	-3.6
299,147	-		Sama_0260	0.74	-1.4
299,147	-		Sama_0260	0.74	-1.4
299,178	+		Sama_0260	0.77	-1.6
299,178	+		Sama_0260	0.77	+1.2
299,243	+		Sama_0260	0.81	-2.3
299,243	+		Sama_0260	0.81	-0.4
299,244	-		Sama_0260	0.81	-1.6
299,561	+				-0.6
299,561	+				-1.4
299,562	+				+0.5
299,605	+				-0.0
299,605	+				-0.5
299,605	+				-0.3
299,605	+				+0.7
299,605	+				-0.3
299,605	+				+1.6
299,605	+				-0.2
299,605	+				-0.0
299,605	+				-0.4
299,605	+				-0.5
299,605	+				+1.2
299,606	-				-0.1
299,606	-				+0.1
299,618	+				+1.5
299,618	+				-0.1
299,618	+				-0.3
299,618	+				-0.2
299,619	-				-1.2
299,619	-				-0.6
299,619	-				+0.4
299,698	+				+0.5
299,699	-				-0.1
299,902	-		Sama_0261	0.21	+2.2
299,918	+		Sama_0261	0.22	-0.1
299,918	+		Sama_0261	0.22	-0.6
299,918	+		Sama_0261	0.22	-1.0
299,918	+		Sama_0261	0.22	+0.6
299,918	+		Sama_0261	0.22	+0.7
299,918	+		Sama_0261	0.22	-0.0
299,919	-		Sama_0261	0.22	-0.1
299,919	-		Sama_0261	0.22	+0.6
299,919	-		Sama_0261	0.22	-0.7
299,919	-		Sama_0261	0.22	+0.2
299,919	-		Sama_0261	0.22	-1.1
299,919	-		Sama_0261	0.22	-0.1
299,919	-		Sama_0261	0.22	-0.2
299,919	-		Sama_0261	0.22	-0.8
299,919	-		Sama_0261	0.22	+0.5
299,937	+		Sama_0261	0.23	+0.4
299,937	+		Sama_0261	0.23	-0.6
299,938	-		Sama_0261	0.23	+1.4
300,059	+		Sama_0261	0.30	+1.9
300,059	+		Sama_0261	0.30	-0.2
300,060	-		Sama_0261	0.30	-1.5
300,060	-		Sama_0261	0.30	-0.0
300,062	+		Sama_0261	0.30	-0.3
300,176	+		Sama_0261	0.37	-1.1
300,176	+		Sama_0261	0.37	+0.3
300,191	+		Sama_0261	0.38	-0.7
300,192	-		Sama_0261	0.38	-0.2
300,228	+		Sama_0261	0.40	-0.6
300,228	+		Sama_0261	0.40	-0.3
300,229	-		Sama_0261	0.40	+0.0
300,238	+		Sama_0261	0.41	-0.9
300,238	+		Sama_0261	0.41	-0.3
300,239	-		Sama_0261	0.41	-1.8
300,306	+		Sama_0261	0.45	-0.2
300,306	+		Sama_0261	0.45	-0.3
300,307	-		Sama_0261	0.45	+0.1
300,307	-		Sama_0261	0.45	-0.0
300,340	+		Sama_0261	0.47	+0.6
300,341	-		Sama_0261	0.47	+0.2
300,347	+		Sama_0261	0.48	+0.1
300,347	+		Sama_0261	0.48	+0.6
300,347	+		Sama_0261	0.48	-0.1
300,347	+		Sama_0261	0.48	+0.6
300,347	+		Sama_0261	0.48	+0.6
300,347	+		Sama_0261	0.48	+2.5
300,348	-		Sama_0261	0.48	+0.6
300,348	-		Sama_0261	0.48	+0.2
300,348	-		Sama_0261	0.48	-0.5
300,348	-		Sama_0261	0.48	-0.2
300,348	-		Sama_0261	0.48	+0.5
300,405	+		Sama_0261	0.51	-2.0
300,451	+		Sama_0261	0.54	+0.6
300,451	+		Sama_0261	0.54	-2.1
300,451	+		Sama_0261	0.54	-1.0
300,451	+		Sama_0261	0.54	-1.4
300,451	+		Sama_0261	0.54	+0.8
300,451	+		Sama_0261	0.54	-0.8
300,452	-		Sama_0261	0.54	-0.4
300,452	-		Sama_0261	0.54	-0.1
300,452	-		Sama_0261	0.54	+1.5
300,452	-		Sama_0261	0.54	-0.7
300,489	+		Sama_0261	0.56	+1.9
300,490	-		Sama_0261	0.56	-0.2
300,527	+		Sama_0261	0.58	-0.2
300,528	-		Sama_0261	0.58	-0.9
300,564	+		Sama_0261	0.61	-0.0
300,581	+		Sama_0261	0.62	+0.7
300,581	+		Sama_0261	0.62	+0.2
300,581	+		Sama_0261	0.62	+0.5
300,582	-		Sama_0261	0.62	-1.8
300,594	+		Sama_0261	0.62	+0.3
300,594	+		Sama_0261	0.62	+0.0
300,595	-		Sama_0261	0.62	+0.2
300,595	-		Sama_0261	0.62	-1.2
300,595	-		Sama_0261	0.62	-0.1
300,595	-		Sama_0261	0.62	+0.7
300,633	+		Sama_0261	0.65	-1.4
300,634	-		Sama_0261	0.65	+0.1
300,634	-		Sama_0261	0.65	+0.1
300,634	-		Sama_0261	0.65	+0.1
300,647	+		Sama_0261	0.66	+0.7
300,647	+		Sama_0261	0.66	+2.2
300,647	+		Sama_0261	0.66	+0.1
300,647	+		Sama_0261	0.66	-1.8
300,647	+		Sama_0261	0.66	-0.2
300,647	+		Sama_0261	0.66	+0.1
300,647	+		Sama_0261	0.66	-0.6
300,647	+		Sama_0261	0.66	-0.6
300,647	+		Sama_0261	0.66	+0.0
300,648	-		Sama_0261	0.66	-0.3
300,648	-		Sama_0261	0.66	-0.2
300,701	+		Sama_0261	0.69	-0.2
300,702	-		Sama_0261	0.69	+1.0
300,702	-		Sama_0261	0.69	+1.3
300,717	+		Sama_0261	0.70	-0.0
300,717	+		Sama_0261	0.70	+1.1
300,718	-		Sama_0261	0.70	+0.7
300,718	-		Sama_0261	0.70	-0.3
300,718	-		Sama_0261	0.70	-0.2
300,718	-		Sama_0261	0.70	-0.1
300,785	+		Sama_0261	0.74	-0.1
300,785	+		Sama_0261	0.74	+0.2
300,828	+		Sama_0261	0.77	-1.6
300,879	+		Sama_0261	0.80	+1.8
300,914	+		Sama_0261	0.82	+1.9
300,914	+		Sama_0261	0.82	+0.6
300,914	+		Sama_0261	0.82	+0.2
300,914	+		Sama_0261	0.82	+0.5
300,915	-		Sama_0261	0.82	-1.8
300,939	+		Sama_0261	0.83	-0.9
300,940	-		Sama_0261	0.83	-2.7
300,944	+		Sama_0261	0.84	-0.6
300,944	+		Sama_0261	0.84	+0.5
300,944	+		Sama_0261	0.84	+0.4
300,945	-		Sama_0261	0.84	+0.0
300,945	-		Sama_0261	0.84	+0.0
300,953	-		Sama_0261	0.84	+0.1
300,960	+		Sama_0261	0.85	-0.4
300,960	+		Sama_0261	0.85	-2.0
300,960	+		Sama_0261	0.85	+0.1
300,960	+		Sama_0261	0.85	-0.1
300,960	+		Sama_0261	0.85	+1.0
300,961	-		Sama_0261	0.85	-0.8
300,961	-		Sama_0261	0.85	-0.4
300,961	-		Sama_0261	0.85	-0.4
300,962	+		Sama_0261	0.85	-0.0
300,991	-		Sama_0261	0.86	+0.4
300,993	+		Sama_0261	0.87	+0.4
300,993	+		Sama_0261	0.87	-0.5
300,993	+		Sama_0261	0.87	+1.2
300,994	-		Sama_0261	0.87	+0.2
300,994	-		Sama_0261	0.87	-0.6
300,994	-		Sama_0261	0.87	+1.5
301,145	+				+0.0
301,145	+				-0.1
301,145	+				+0.5
301,146	-				+0.9
301,168	+				+1.4
301,169	-				+0.7
301,169	-				-0.3
301,190	-				+1.2
301,190	-				+1.4
301,203	+				-0.0
301,204	-				-2.5
301,204	-				-0.5
301,204	-				+1.2
301,219	+				+0.9
301,219	+				-0.8
301,219	+				+0.4
301,220	-				-0.1
301,237	+				+0.4
301,237	+				-0.1
301,237	+				-1.2
301,237	+				+1.0
301,238	-				+0.3
301,238	-				+0.2
301,252	+				+0.0
301,285	+				+1.3
301,285	+				+0.6
301,285	+				-0.5
301,285	+				-0.4
301,286	-				+1.6
301,286	-				-0.8
301,286	-				+0.6
301,286	-				-0.6
301,286	-				+0.9
301,286	-				+0.5
301,286	-				-0.5
301,291	+				-0.5
301,400	-				-0.5
301,421	+				-0.5
301,454	+				-1.1
301,454	+				-1.3
301,454	+				+1.3
301,455	-				-1.1
301,455	-				+1.5
301,455	-				+0.6
301,475	+				+0.5
301,485	+				+0.0
301,486	-				+0.9
301,486	-				-0.1
301,486	-				+0.5
301,486	-				+0.2
301,486	-				-2.5
301,599	+				+0.8
301,599	+				-1.5
301,599	+				+1.2
301,600	-				-0.5
301,602	-				-1.8
301,631	+				-0.6
301,631	+				+0.5
301,631	+				-2.1
301,631	+				-0.5
301,631	+				+1.2
301,632	-				-0.6
301,632	-				-0.6
301,737	+		Sama_0262	0.15	+0.2
301,738	-		Sama_0262	0.15	+0.2
301,745	+		Sama_0262	0.16	-0.1
301,778	+		Sama_0262	0.20	+0.3
301,778	+		Sama_0262	0.20	-0.3
301,778	+		Sama_0262	0.20	+0.9
301,778	+		Sama_0262	0.20	+0.0
301,778	+		Sama_0262	0.20	-0.8
301,778	+		Sama_0262	0.20	-1.6
301,779	-		Sama_0262	0.21	-0.4
301,779	-		Sama_0262	0.21	-0.7
301,779	-		Sama_0262	0.21	+0.9
301,779	-		Sama_0262	0.21	+0.7
301,779	-		Sama_0262	0.21	+0.0
301,779	-		Sama_0262	0.21	-0.0
301,779	-		Sama_0262	0.21	-0.2
301,818	-		Sama_0262	0.26	-0.4
301,818	-		Sama_0262	0.26	+0.5
301,844	+		Sama_0262	0.29	-0.2
301,844	+		Sama_0262	0.29	+1.2
301,844	+		Sama_0262	0.29	-1.1
301,844	+		Sama_0262	0.29	-1.4
301,844	+		Sama_0262	0.29	+0.1
301,844	+		Sama_0262	0.29	+0.7
301,844	+		Sama_0262	0.29	-0.6
301,844	+		Sama_0262	0.29	+1.7
301,844	+		Sama_0262	0.29	-1.3
301,844	+		Sama_0262	0.29	+0.2
301,844	+		Sama_0262	0.29	-0.3
301,844	+		Sama_0262	0.29	+0.5
301,844	+		Sama_0262	0.29	+0.3
301,844	+		Sama_0262	0.29	+0.2
301,845	-		Sama_0262	0.30	+0.5
301,845	-		Sama_0262	0.30	-0.9
301,845	-		Sama_0262	0.30	+0.1
301,845	-		Sama_0262	0.30	-0.6
301,845	-		Sama_0262	0.30	-0.0
301,845	-		Sama_0262	0.30	-0.2
301,845	-		Sama_0262	0.30	-0.1
301,845	-		Sama_0262	0.30	+0.5
301,845	-		Sama_0262	0.30	+0.6
301,845	-		Sama_0262	0.30	+0.5
301,855	-		Sama_0262	0.31	-1.1
301,885	+		Sama_0262	0.35	+1.1
301,886	-		Sama_0262	0.35	-0.1
301,942	-		Sama_0262	0.43	+1.0
302,006	-		Sama_0262	0.52	-0.0
302,022	+		Sama_0262	0.54	+0.1
302,023	-		Sama_0262	0.54	+0.3
302,023	-		Sama_0262	0.54	+1.2
302,027	+		Sama_0262	0.55	+0.7
302,027	+		Sama_0262	0.55	+0.1
302,027	+		Sama_0262	0.55	+1.1
302,085	+		Sama_0262	0.63	+0.9
302,085	+		Sama_0262	0.63	+0.8
302,085	+		Sama_0262	0.63	-0.1
302,085	+		Sama_0262	0.63	-0.4
302,085	+		Sama_0262	0.63	+0.5
302,086	-		Sama_0262	0.63	+0.3
302,086	-		Sama_0262	0.63	+0.2
302,086	-		Sama_0262	0.63	+1.2
302,086	-		Sama_0262	0.63	+0.4
302,086	-		Sama_0262	0.63	+1.3
302,086	-		Sama_0262	0.63	+2.5
302,086	-		Sama_0262	0.63	+0.1
302,086	-		Sama_0262	0.63	-0.5
302,143	-		Sama_0262	0.71	+0.4