Strain Fitness in Shewanella oneidensis MR-1 around SO4675

Experiment: Paraquat dichloride 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.5 mg/ml
4,872,510	-	kbl	SO4674	0.44	-3.0
4,872,543	+	kbl	SO4674	0.46	+0.1
4,872,551	-	kbl	SO4674	0.47	-1.1
4,872,559	-	kbl	SO4674	0.48	+1.2
4,872,598	-	kbl	SO4674	0.51	-1.9
4,872,598	-	kbl	SO4674	0.51	-0.7
4,872,600	+	kbl	SO4674	0.51	-1.4
4,872,608	-	kbl	SO4674	0.52	-2.2
4,872,767	+	kbl	SO4674	0.65	-0.8
4,872,778	+	kbl	SO4674	0.66	-0.2
4,872,786	-	kbl	SO4674	0.67	-3.9
4,872,787	-	kbl	SO4674	0.67	-0.6
4,872,892	+	kbl	SO4674	0.76	+0.6
4,872,903	+	kbl	SO4674	0.76	-0.8
4,872,966	-	kbl	SO4674	0.82	-0.6
4,872,980	+	kbl	SO4674	0.83	-1.5
4,872,981	-	kbl	SO4674	0.83	-2.6
4,872,982	-	kbl	SO4674	0.83	-0.0
4,872,982	-	kbl	SO4674	0.83	-1.6
4,872,993	+	kbl	SO4674	0.84	-0.1
4,873,001	-	kbl	SO4674	0.85	-0.2
4,873,001	-	kbl	SO4674	0.85	-0.4
4,873,003	+	kbl	SO4674	0.85	-1.2
4,873,003	+	kbl	SO4674	0.85	-0.2
4,873,003	+	kbl	SO4674	0.85	+0.5
4,873,011	-	kbl	SO4674	0.86	+0.6
4,873,029	-	kbl	SO4674	0.87	-0.3
4,873,082	+				+0.7
4,873,135	-				+0.5
4,873,172	+				-0.7
4,873,180	-				-2.3
4,873,214	+				-2.7
4,873,245	-				-0.7
4,873,260	-				+0.3
4,873,429	-				+0.2
4,873,429	-				-0.4
4,873,466	+				-0.3
4,873,630	+		SO4675	0.25	+0.6
4,873,639	-		SO4675	0.26	-0.3
4,873,751	+		SO4675	0.44	-0.5
4,873,751	+		SO4675	0.44	-0.6
4,873,777	+		SO4675	0.48	-0.3
4,873,854	+		SO4675	0.59	+1.1
4,873,854	+		SO4675	0.59	-0.2
4,873,854	+		SO4675	0.59	+0.2
4,873,854	+		SO4675	0.59	-0.7
4,873,854	+		SO4675	0.59	-0.4
4,873,862	-		SO4675	0.61	-0.9
4,873,862	-		SO4675	0.61	+1.1
4,873,862	-		SO4675	0.61	-2.8
4,873,862	-		SO4675	0.61	-1.4
4,873,862	-		SO4675	0.61	+0.5
4,873,862	-		SO4675	0.61	-1.8
4,873,862	-		SO4675	0.61	-2.4
4,873,893	+		SO4675	0.65	-1.8
4,873,893	+		SO4675	0.65	-0.0
4,873,893	+		SO4675	0.65	-0.1
4,873,896	-		SO4675	0.66	-1.3
4,873,901	-		SO4675	0.67	+0.3
4,873,911	+		SO4675	0.68	-1.7
4,873,941	+		SO4675	0.73	+0.8
4,874,024	-		SO4675	0.86	-1.3
4,874,077	+				+0.6
4,874,077	+				+0.2
4,874,085	-				+0.1
4,874,085	-				+0.7
4,874,085	-				+0.6
4,874,229	+				-0.1
4,874,229	+				-0.0
4,874,237	-				-0.4
4,874,239	+				+0.5
4,874,271	+				-0.5
4,874,284	-				+0.8
4,874,311	+				+0.6
4,874,358	+				+0.3
4,874,360	-				-0.8