Strain Fitness in Shewanella oneidensis MR-1 around SO4673

Experiment: Paraquat dichloride 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.5 mg/ml
4,869,968	+	glpG	SO4671	0.31	+0.9
4,869,986	-	glpG	SO4671	0.33	-0.5
4,869,986	-	glpG	SO4671	0.33	-1.1
4,869,998	-	glpG	SO4671	0.34	-0.7
4,870,119	-	glpG	SO4671	0.49	-0.1
4,870,191	+	glpG	SO4671	0.57	-1.6
4,870,202	+	glpG	SO4671	0.58	-1.0
4,870,218	+	glpG	SO4671	0.60	-0.9
4,870,342	+	glpG	SO4671	0.75	-0.4
4,870,342	+	glpG	SO4671	0.75	-0.2
4,870,350	-	glpG	SO4671	0.76	-1.4
4,870,488	+				-0.2
4,870,488	+				-2.0
4,870,496	-				-0.9
4,870,503	+				-0.1
4,870,508	+				-0.3
4,870,516	-				-1.8
4,870,544	-				-1.0
4,870,610	-	glpE	SO4672	0.20	-1.7
4,870,681	+	glpE	SO4672	0.43	-2.9
4,870,681	+	glpE	SO4672	0.43	-0.2
4,870,804	-	glpE	SO4672	0.83	-0.7
4,870,810	+	glpE	SO4672	0.85	-2.6
4,870,894	-				-3.1
4,870,910	+				-1.9
4,870,913	-				-0.3
4,870,916	+				-2.6
4,870,919	+				+0.3
4,870,924	-				-1.1
4,870,980	+				+0.0
4,871,039	+				-1.0
4,871,058	+	tdh	SO4673	0.10	-1.6
4,871,058	+	tdh	SO4673	0.10	+0.0
4,871,066	-	tdh	SO4673	0.11	-1.5
4,871,066	-	tdh	SO4673	0.11	-0.5
4,871,141	-	tdh	SO4673	0.18	+0.6
4,871,191	-	tdh	SO4673	0.23	-0.6
4,871,276	+	tdh	SO4673	0.31	-1.2
4,871,314	+	tdh	SO4673	0.35	-2.6
4,871,367	+	tdh	SO4673	0.40	-0.5
4,871,372	+	tdh	SO4673	0.41	-0.4
4,871,382	+	tdh	SO4673	0.42	-1.0
4,871,408	-	tdh	SO4673	0.44	-0.1
4,871,478	-	tdh	SO4673	0.51	-1.3
4,871,519	-	tdh	SO4673	0.55	-0.9
4,871,555	-	tdh	SO4673	0.59	-2.9
4,871,616	+	tdh	SO4673	0.65	-1.4
4,871,639	-	tdh	SO4673	0.67	-1.1
4,871,644	+	tdh	SO4673	0.67	-1.7
4,871,645	-	tdh	SO4673	0.67	-0.3
4,871,645	-	tdh	SO4673	0.67	-0.2
4,871,650	-	tdh	SO4673	0.68	-0.7
4,871,650	-	tdh	SO4673	0.68	+0.2
4,871,658	+	tdh	SO4673	0.69	-0.5
4,871,714	-	tdh	SO4673	0.74	-0.2
4,871,714	-	tdh	SO4673	0.74	-1.3
4,871,972	-				-0.5
4,872,034	-				-1.5
4,872,049	+				-0.2
4,872,056	+				-0.7
4,872,064	-				-0.7
4,872,083	+				-0.6
4,872,098	+				+0.4
4,872,130	+	kbl	SO4674	0.12	-0.2
4,872,336	+	kbl	SO4674	0.29	-1.2
4,872,344	-	kbl	SO4674	0.30	-1.0
4,872,370	+	kbl	SO4674	0.32	+0.1
4,872,443	+	kbl	SO4674	0.38	+0.8
4,872,443	+	kbl	SO4674	0.38	+0.7
4,872,443	+	kbl	SO4674	0.38	-1.0
4,872,443	+	kbl	SO4674	0.38	-0.4
4,872,443	+	kbl	SO4674	0.38	-0.6
4,872,443	+	kbl	SO4674	0.38	-1.6
4,872,443	+	kbl	SO4674	0.38	+0.0
4,872,443	+	kbl	SO4674	0.38	-0.1
4,872,443	+	kbl	SO4674	0.38	+0.6
4,872,449	+	kbl	SO4674	0.38	-0.5
4,872,451	-	kbl	SO4674	0.39	-0.4
4,872,451	-	kbl	SO4674	0.39	-1.0
4,872,451	-	kbl	SO4674	0.39	+0.6
4,872,451	-	kbl	SO4674	0.39	-0.2
4,872,451	-	kbl	SO4674	0.39	-0.2
4,872,451	-	kbl	SO4674	0.39	-0.0
4,872,451	-	kbl	SO4674	0.39	-0.7
4,872,457	-	kbl	SO4674	0.39	+2.3
4,872,462	-	kbl	SO4674	0.40	-0.9
4,872,510	-	kbl	SO4674	0.44	-3.0
4,872,543	+	kbl	SO4674	0.46	+0.1
4,872,551	-	kbl	SO4674	0.47	-1.1
4,872,559	-	kbl	SO4674	0.48	+1.2
4,872,598	-	kbl	SO4674	0.51	-1.9
4,872,598	-	kbl	SO4674	0.51	-0.7
4,872,600	+	kbl	SO4674	0.51	-1.4
4,872,608	-	kbl	SO4674	0.52	-2.2
4,872,767	+	kbl	SO4674	0.65	-0.8
4,872,778	+	kbl	SO4674	0.66	-0.2
4,872,786	-	kbl	SO4674	0.67	-3.9
4,872,787	-	kbl	SO4674	0.67	-0.6
4,872,892	+	kbl	SO4674	0.76	+0.6
4,872,903	+	kbl	SO4674	0.76	-0.8
4,872,966	-	kbl	SO4674	0.82	-0.6