Strain Fitness in Shewanella oneidensis MR-1 around SO4651

Experiment: Paraquat dichloride 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.5 mg/ml
4,846,829	+				-0.4
4,846,846	+				+0.1
4,846,854	-				-0.8
4,846,854	-				-0.6
4,846,881	-				-1.9
4,847,028	+				-0.5
4,847,040	+				-1.0
4,847,048	-				-0.9
4,847,060	-				-0.2
4,847,137	+		SO4650	0.15	-0.5
4,847,143	+		SO4650	0.16	+0.9
4,847,151	-		SO4650	0.17	-0.4
4,847,202	+		SO4650	0.25	-0.3
4,847,263	-		SO4650	0.35	-0.2
4,847,501	+		SO4650	0.72	-1.0
4,847,509	-		SO4650	0.73	+0.3
4,847,509	-		SO4650	0.73	+0.1
4,847,570	-		SO4650	0.83	+0.3
4,847,723	+				+0.4
4,847,747	+				-0.9
4,847,767	+				+0.0
4,847,793	+		SO4651	0.19	+0.2
4,847,793	+		SO4651	0.19	-2.7
4,847,794	+		SO4651	0.19	+1.5
4,847,802	-		SO4651	0.24	-0.2
4,847,810	-		SO4651	0.28	-0.1
4,847,838	-		SO4651	0.44	+0.2
4,847,857	-		SO4651	0.55	+0.1
4,847,976	-				+0.4
4,848,051	-				+0.6
4,848,051	-				+0.3
4,848,060	+				-0.2
4,848,060	+				-0.9
4,848,217	-	sbp	SO4652	0.20	-0.1
4,848,227	-	sbp	SO4652	0.21	+0.1
4,848,243	+	sbp	SO4652	0.22	-0.3
4,848,251	-	sbp	SO4652	0.23	-0.5
4,848,284	+	sbp	SO4652	0.26	-0.5
4,848,292	-	sbp	SO4652	0.27	-0.5
4,848,351	+	sbp	SO4652	0.33	-0.6
4,848,366	+	sbp	SO4652	0.34	-0.5
4,848,366	+	sbp	SO4652	0.34	+0.4
4,848,447	+	sbp	SO4652	0.42	+0.9
4,848,455	+	sbp	SO4652	0.43	+0.1
4,848,455	-	sbp	SO4652	0.43	-0.2
4,848,456	-	sbp	SO4652	0.43	-0.7
4,848,456	-	sbp	SO4652	0.43	-0.6
4,848,456	-	sbp	SO4652	0.43	+0.1
4,848,510	+	sbp	SO4652	0.49	-0.0
4,848,515	+	sbp	SO4652	0.49	-0.1
4,848,517	+	sbp	SO4652	0.49	+0.0
4,848,560	-	sbp	SO4652	0.53	+0.0
4,848,591	+	sbp	SO4652	0.57	+1.3
4,848,625	+	sbp	SO4652	0.60	-0.9
4,848,633	-	sbp	SO4652	0.61	-1.1
4,848,824	+	sbp	SO4652	0.79	+0.8
4,848,824	+	sbp	SO4652	0.79	-1.3
4,848,824	+	sbp	SO4652	0.79	+1.2
4,848,824	+	sbp	SO4652	0.79	+1.0
4,848,824	+	sbp	SO4652	0.79	+0.5
4,848,824	+	sbp	SO4652	0.79	+0.2
4,848,832	-	sbp	SO4652	0.80	+0.7
4,848,832	-	sbp	SO4652	0.80	+0.2
4,848,832	-	sbp	SO4652	0.80	+1.3
4,848,897	+	sbp	SO4652	0.87	-0.5
4,848,932	-				-1.1