Experiment: Paraquat dichloride 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO4600 and mtr are separated by 212 nucleotides mtr and plsB are separated by 4 nucleotides
SO4600: SO4600 - antigen, putative (NCBI ptt file), at 4,794,347 to 4,795,129
SO4600
SO4601: mtr - tryptophan-specific transport protein (NCBI ptt file), at 4,795,342 to 4,796,586
mtr
SO4602: plsB - glycerol-3-phosphate acyltransferase (NCBI ptt file), at 4,796,591 to 4,799,020
plsB
Position (kb) 4795
4796
4797 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 4794.385 kb on + strand at 4794.453 kb on - strand, within SO4600 at 4794.457 kb on + strand, within SO4600 at 4794.458 kb on - strand, within SO4600 at 4794.465 kb on - strand, within SO4600 at 4794.465 kb on - strand, within SO4600 at 4794.508 kb on + strand, within SO4600 at 4794.508 kb on + strand, within SO4600 at 4794.508 kb on + strand, within SO4600 at 4794.508 kb on + strand, within SO4600 at 4794.516 kb on - strand, within SO4600 at 4794.516 kb on - strand, within SO4600 at 4794.516 kb on - strand, within SO4600 at 4794.516 kb on - strand, within SO4600 at 4794.516 kb on - strand, within SO4600 at 4794.516 kb on - strand, within SO4600 at 4794.660 kb on - strand, within SO4600 at 4794.692 kb on + strand, within SO4600 at 4794.692 kb on + strand, within SO4600 at 4794.695 kb on - strand, within SO4600 at 4794.761 kb on + strand, within SO4600 at 4794.834 kb on - strand, within SO4600 at 4794.924 kb on - strand, within SO4600 at 4794.924 kb on - strand, within SO4600 at 4795.112 kb on + strand at 4795.124 kb on + strand at 4795.125 kb on - strand at 4795.165 kb on - strand at 4795.314 kb on + strand at 4795.411 kb on - strand at 4795.413 kb on + strand at 4795.421 kb on - strand at 4795.490 kb on - strand, within mtr at 4795.691 kb on - strand, within mtr at 4795.788 kb on + strand, within mtr at 4795.803 kb on - strand, within mtr at 4796.107 kb on + strand, within mtr at 4796.107 kb on - strand, within mtr at 4796.118 kb on + strand, within mtr at 4796.135 kb on - strand, within mtr at 4796.144 kb on + strand, within mtr at 4796.144 kb on + strand, within mtr at 4796.165 kb on + strand, within mtr at 4796.222 kb on - strand, within mtr at 4796.278 kb on + strand, within mtr at 4796.342 kb on - strand, within mtr at 4796.342 kb on - strand, within mtr at 4796.475 kb on - strand at 4796.506 kb on + strand at 4796.507 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.5 mg/ml remove 4,794,385 + +0.6 4,794,453 - SO4600 0.14 +0.3 4,794,457 + SO4600 0.14 -3.3 4,794,458 - SO4600 0.14 -0.6 4,794,465 - SO4600 0.15 -0.2 4,794,465 - SO4600 0.15 +0.4 4,794,508 + SO4600 0.21 +0.1 4,794,508 + SO4600 0.21 +1.3 4,794,508 + SO4600 0.21 +0.6 4,794,508 + SO4600 0.21 -0.5 4,794,516 - SO4600 0.22 +0.5 4,794,516 - SO4600 0.22 +0.3 4,794,516 - SO4600 0.22 +0.6 4,794,516 - SO4600 0.22 +0.3 4,794,516 - SO4600 0.22 -0.4 4,794,516 - SO4600 0.22 -1.2 4,794,660 - SO4600 0.40 -0.0 4,794,692 + SO4600 0.44 +0.4 4,794,692 + SO4600 0.44 -0.4 4,794,695 - SO4600 0.44 +0.4 4,794,761 + SO4600 0.53 -0.6 4,794,834 - SO4600 0.62 -0.3 4,794,924 - SO4600 0.74 +0.6 4,794,924 - SO4600 0.74 +0.3 4,795,112 + -1.5 4,795,124 + -0.5 4,795,125 - +0.0 4,795,165 - -0.6 4,795,314 + +0.3 4,795,411 - -1.1 4,795,413 + -1.7 4,795,421 - -4.7 4,795,490 - mtr SO4601 0.12 -0.7 4,795,691 - mtr SO4601 0.28 -5.3 4,795,788 + mtr SO4601 0.36 -1.6 4,795,803 - mtr SO4601 0.37 -2.7 4,796,107 + mtr SO4601 0.61 -2.7 4,796,107 - mtr SO4601 0.61 -0.1 4,796,118 + mtr SO4601 0.62 -1.8 4,796,135 - mtr SO4601 0.64 -2.5 4,796,144 + mtr SO4601 0.64 -1.8 4,796,144 + mtr SO4601 0.64 -3.1 4,796,165 + mtr SO4601 0.66 -2.3 4,796,222 - mtr SO4601 0.71 -1.8 4,796,278 + mtr SO4601 0.75 -1.0 4,796,342 - mtr SO4601 0.80 -3.3 4,796,342 - mtr SO4601 0.80 -4.2 4,796,475 - -2.3 4,796,506 + -2.0 4,796,507 + -3.8
Or see this region's nucleotide sequence