Strain Fitness in Shewanella oneidensis MR-1 around SO4393

Experiment: Paraquat dichloride 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.5 mg/ml
4,588,121	+		SO4391	0.61	+0.5
4,588,121	+		SO4391	0.61	+0.5
4,588,128	+		SO4391	0.62	-0.2
4,588,129	-		SO4391	0.62	+0.6
4,588,169	-		SO4391	0.67	-0.5
4,588,194	-		SO4391	0.71	-1.1
4,588,195	-		SO4391	0.71	+1.3
4,588,300	+		SO4391	0.85	-1.0
4,588,300	+		SO4391	0.85	+0.9
4,588,300	+		SO4391	0.85	-0.3
4,588,310	+		SO4391	0.87	-1.1
4,588,310	+		SO4391	0.87	+0.7
4,588,310	+		SO4391	0.87	+0.7
4,588,310	+		SO4391	0.87	+0.4
4,588,310	+		SO4391	0.87	+0.3
4,588,310	+		SO4391	0.87	+0.2
4,588,310	+		SO4391	0.87	+0.6
4,588,310	+		SO4391	0.87	-2.6
4,588,310	+		SO4391	0.87	+0.1
4,588,310	+		SO4391	0.87	-0.6
4,588,310	+		SO4391	0.87	+0.8
4,588,310	+		SO4391	0.87	-0.5
4,588,310	+		SO4391	0.87	+0.2
4,588,310	+		SO4391	0.87	-0.1
4,588,318	-		SO4391	0.88	+1.5
4,588,330	+		SO4391	0.89	+0.0
4,588,330	+		SO4391	0.89	+0.4
4,588,330	+		SO4391	0.89	-0.2
4,588,330	+		SO4391	0.89	-0.6
4,588,330	+		SO4391	0.89	-0.8
4,588,330	+		SO4391	0.89	+0.2
4,588,330	+		SO4391	0.89	+0.2
4,588,330	+		SO4391	0.89	-0.3
4,588,330	+		SO4391	0.89	-1.4
4,588,330	+		SO4391	0.89	+0.1
4,588,330	+		SO4391	0.89	-0.8
4,588,330	+		SO4391	0.89	+0.0
4,588,330	+		SO4391	0.89	-0.8
4,588,330	+		SO4391	0.89	-0.2
4,588,330	+		SO4391	0.89	-0.7
4,588,330	+		SO4391	0.89	+0.6
4,588,330	+		SO4391	0.89	-0.0
4,588,338	-				+0.2
4,588,338	-				+0.4
4,588,338	-				+0.2
4,588,338	-				-0.6
4,588,338	-				-0.1
4,588,338	-				-1.6
4,588,338	-				-0.5
4,588,342	+				-0.1
4,588,342	+				+0.3
4,588,342	+				-0.5
4,588,364	-				+0.9
4,588,364	-				+0.3
4,588,382	+				+0.5
4,588,382	+				+0.9
4,588,382	+				+0.1
4,588,382	+				-0.1
4,588,382	+				+0.4
4,588,431	-				+0.0
4,588,432	+				-0.4
4,588,432	+				-0.8
4,588,467	+				+0.6
4,588,467	+				+0.2
4,588,467	+				+0.0
4,588,467	+				-0.1
4,588,467	+				-0.8
4,588,467	+				+0.9
4,588,467	+				+0.9
4,588,467	+				+0.3
4,588,467	+				-1.7
4,588,467	+				-0.7
4,588,467	+				+0.7
4,588,467	+				+0.8
4,588,467	+				-0.1
4,588,473	+				-0.1
4,588,473	+				-0.1
4,588,475	-				-0.4
4,588,475	-				-0.6
4,588,475	-				-2.8
4,588,475	-				-0.1
4,588,475	-				-0.4
4,588,475	-				+0.4
4,588,475	-				-0.3
4,588,475	-				-0.1
4,588,475	-				-0.6
4,588,475	-				+0.3
4,588,475	-				+0.6
4,588,475	-				+0.5
4,588,475	-				-0.5
4,588,475	-				+1.2
4,588,475	-				-0.2
4,588,475	-				+0.5
4,588,475	-				-0.7
4,588,475	-				-1.5
4,588,476	-				+0.2
4,588,480	+				+1.3
4,588,480	+				+0.9
4,588,480	+				-0.4
4,588,480	+				-0.8
4,588,480	+				+1.7
4,588,480	+				+0.1
4,588,480	+				-0.4
4,588,481	+				-0.5
4,588,481	-				-0.0
4,588,488	-				+0.3
4,588,488	-				-0.8
4,588,488	-				-0.7
4,588,488	-				-0.5
4,588,488	-				+0.7
4,588,488	-				+0.4
4,588,488	-				+0.4
4,588,488	-				+1.1
4,588,488	-				+0.6
4,588,488	-				-0.5
4,588,488	-				-0.1
4,588,488	-				-0.6
4,588,488	-				+0.2
4,588,488	-				-0.1
4,588,488	-				-0.5
4,588,488	-				+0.3
4,588,494	-				-0.1
4,588,515	+				+0.7
4,588,515	+				+0.4
4,588,515	+				+0.4
4,588,515	+				+0.0
4,588,515	+				-0.3
4,588,519	+				+0.2
4,588,523	-				+1.0
4,588,523	-				+0.2
4,588,523	-				-0.3
4,588,523	-				-0.8
4,588,524	+				-0.3
4,588,529	-				-1.5
4,588,535	+				-0.4
4,588,535	+				+0.1
4,588,535	+				+0.8
4,588,535	+				-0.2
4,588,535	+				+0.6
4,588,536	+				+0.0
4,588,536	+				-1.2
4,588,543	-				+0.2
4,588,543	-				-0.1
4,588,543	-				+0.5
4,588,543	-				+1.5
4,588,543	-				+0.2
4,588,543	-				-1.4
4,588,543	-				-1.1
4,588,543	-				+0.1
4,588,543	-				-0.1
4,588,544	-				+0.9
4,588,560	-				-0.1
4,588,575	-				-0.3
4,588,602	+				-0.1
4,588,602	+				+0.3
4,588,602	+				-0.1
4,588,602	+				-0.3
4,588,602	+				-1.0
4,588,629	-				-2.7
4,588,636	-				+0.1
4,588,636	-				+2.9
4,588,882	-				+0.6
4,588,965	+				+0.4
4,588,970	+				+0.2
4,589,028	-				+0.3
4,589,180	+		SO4393	0.23	-0.2
4,589,188	-		SO4393	0.24	+0.4
4,589,203	-		SO4393	0.28	-1.2
4,589,235	-		SO4393	0.35	-1.6
4,589,445	-		SO4393	0.81	-0.5
4,589,552	-				-0.5
4,589,839	-	pspE-2	SO4394	0.53	-0.2
4,589,839	-	pspE-2	SO4394	0.53	+1.0
4,589,861	+	pspE-2	SO4394	0.60	+1.0
4,589,869	-	pspE-2	SO4394	0.62	-0.0
4,589,869	-	pspE-2	SO4394	0.62	+0.1
4,589,979	+				+0.8
4,589,979	+				-0.5
4,589,979	+				+0.9
4,589,987	-				+0.4
4,590,022	-				-0.4
4,590,078	+		SO4395	0.28	-0.2
4,590,078	+		SO4395	0.28	-3.2
4,590,078	+		SO4395	0.28	-1.7
4,590,086	-		SO4395	0.33	-0.6
4,590,086	-		SO4395	0.33	-1.7
4,590,086	-		SO4395	0.33	-0.6
4,590,124	+		SO4395	0.56	-0.0
4,590,289	-				-0.3
4,590,289	-				-0.1
4,590,289	-				+1.3
4,590,289	-				+0.3
4,590,289	-				-1.8
4,590,289	-				-0.4
4,590,318	+	acpD	SO4396	0.10	-0.0
4,590,334	-	acpD	SO4396	0.13	-0.4
4,590,339	+	acpD	SO4396	0.14	+0.1
4,590,339	+	acpD	SO4396	0.14	-1.4
4,590,339	+	acpD	SO4396	0.14	+1.5
4,590,404	-	acpD	SO4396	0.25	-0.9
4,590,508	-	acpD	SO4396	0.42	+0.1
4,590,511	+	acpD	SO4396	0.43	-0.4
4,590,514	-	acpD	SO4396	0.43	+0.3