Strain Fitness in Shewanella oneidensis MR-1 around SO4377

Experiment: Paraquat dichloride 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.5 mg/ml
4,569,803	-		SO4375	0.71	-2.7
4,569,812	+		SO4375	0.74	-0.2
4,569,820	-		SO4375	0.75	-0.7
4,569,868	+		SO4375	0.86	+1.4
4,569,913	-				-2.2
4,569,986	+				-2.4
4,569,986	+				-2.2
4,569,994	-				-1.4
4,569,994	-				-1.7
4,569,994	-				-2.3
4,569,994	-				-2.6
4,569,994	-				-0.9
4,570,001	+				-0.1
4,570,004	-				-0.4
4,570,004	-				-2.2
4,570,004	-				-0.8
4,570,011	+		SO4376	0.11	+0.2
4,570,016	+		SO4376	0.11	-1.7
4,570,019	-		SO4376	0.12	-0.5
4,570,019	-		SO4376	0.12	-2.0
4,570,019	-		SO4376	0.12	-1.4
4,570,019	-		SO4376	0.12	-0.7
4,570,019	-		SO4376	0.12	-1.9
4,570,029	+		SO4376	0.13	-2.2
4,570,208	+		SO4376	0.34	-0.2
4,570,237	-		SO4376	0.38	-1.1
4,570,392	+		SO4376	0.56	-4.2
4,570,392	-		SO4376	0.56	-0.9
4,570,395	-		SO4376	0.57	-1.5
4,570,400	-		SO4376	0.57	-0.8
4,570,431	+		SO4376	0.61	-1.5
4,570,560	-		SO4376	0.77	-0.8
4,570,571	+		SO4376	0.78	-2.1
4,570,578	+		SO4376	0.79	-0.8
4,570,578	+		SO4376	0.79	-1.4
4,570,586	-		SO4376	0.80	-0.7
4,570,601	-		SO4376	0.82	-2.4
4,570,619	+		SO4376	0.84	-3.7
4,570,656	-		SO4376	0.88	-1.5
4,570,684	+				+0.1
4,570,887	+				-2.4
4,570,934	+				-1.9
4,570,988	+				-2.8
4,571,007	+		SO4377	0.10	-1.2
4,571,038	-		SO4377	0.11	-0.6
4,571,107	+		SO4377	0.14	-1.6
4,571,108	+		SO4377	0.14	-0.9
4,571,151	+		SO4377	0.16	-3.2
4,571,156	+		SO4377	0.16	-2.0
4,571,196	-		SO4377	0.18	-1.2
4,571,216	+		SO4377	0.18	-0.5
4,571,224	-		SO4377	0.19	-0.8
4,571,231	-		SO4377	0.19	-1.2
4,571,323	-		SO4377	0.23	-2.4
4,571,368	+		SO4377	0.25	-1.0
4,571,376	+		SO4377	0.25	-1.1
4,571,432	-		SO4377	0.27	-1.4
4,571,458	+		SO4377	0.28	-2.6
4,571,466	-		SO4377	0.28	-2.1
4,571,529	+		SO4377	0.31	-2.4
4,571,537	-		SO4377	0.31	-3.0
4,571,596	-		SO4377	0.34	-0.8
4,571,603	-		SO4377	0.34	-0.2
4,571,693	+		SO4377	0.38	-1.2
4,571,701	-		SO4377	0.38	-1.3
4,571,764	+		SO4377	0.40	-2.1
4,571,776	+		SO4377	0.41	-1.3
4,571,797	+		SO4377	0.42	-2.0
4,571,819	+		SO4377	0.43	-1.5
4,571,836	+		SO4377	0.43	-2.8
4,571,852	-		SO4377	0.44	-1.0
4,571,878	+		SO4377	0.45	-1.7
4,571,886	-		SO4377	0.45	-3.7
4,571,886	-		SO4377	0.45	-2.9
4,572,045	+		SO4377	0.52	-1.2
4,572,045	+		SO4377	0.52	-1.3
4,572,045	+		SO4377	0.52	+0.3
4,572,045	+		SO4377	0.52	-0.3
4,572,045	+		SO4377	0.52	-1.5
4,572,053	-		SO4377	0.52	-1.6
4,572,096	+		SO4377	0.54	-1.2
4,572,121	-		SO4377	0.55	-2.5
4,572,153	+		SO4377	0.56	-0.6
4,572,161	-		SO4377	0.56	-0.8
4,572,319	-		SO4377	0.63	-3.1
4,572,343	-		SO4377	0.63	-1.3
4,572,362	+		SO4377	0.64	-1.7
4,572,370	-		SO4377	0.65	-1.7
4,572,370	-		SO4377	0.65	-1.8
4,572,454	+		SO4377	0.68	-1.6
4,572,472	-		SO4377	0.69	-0.8
4,572,472	-		SO4377	0.69	-2.2
4,572,475	+		SO4377	0.69	-1.8
4,572,490	-		SO4377	0.69	-1.8
4,572,490	-		SO4377	0.69	-3.2
4,572,495	+		SO4377	0.70	-2.2
4,572,509	+		SO4377	0.70	-1.3
4,572,590	-		SO4377	0.73	-2.3
4,572,597	+		SO4377	0.74	-2.0
4,572,610	-		SO4377	0.74	-1.7
4,572,680	+		SO4377	0.77	-0.5
4,572,755	-		SO4377	0.80	-2.3
4,572,832	-		SO4377	0.83	-1.4
4,572,871	-		SO4377	0.85	-1.5
4,572,916	+		SO4377	0.86	-4.3
4,572,916	+		SO4377	0.86	-3.0
4,572,916	+		SO4377	0.86	-2.2
4,572,952	+		SO4377	0.88	-2.5
4,572,952	+		SO4377	0.88	-2.5
4,572,960	-		SO4377	0.88	-1.5
4,572,960	-		SO4377	0.88	-0.9
4,572,960	-		SO4377	0.88	-1.0
4,573,036	-				-3.5
4,573,050	-				-2.1
4,573,129	+				-2.0
4,573,142	+				-1.5
4,573,165	+				-1.4
4,573,165	+				-2.1
4,573,167	-				-0.3
4,573,173	-				-2.1
4,573,173	-				-1.3
4,573,280	+				+0.1
4,573,280	+				-0.5
4,573,288	-				-1.0
4,573,290	+				+1.0
4,573,290	+				+0.2
4,573,290	+				-2.6
4,573,290	+				+0.7
4,573,290	+				-2.1
4,573,290	+				+0.1
4,573,290	+				-0.4
4,573,290	+				+0.0
4,573,298	-				-1.3
4,573,298	-				+0.6
4,573,298	-				-2.0
4,573,298	-				-0.5
4,573,298	-				-0.6
4,573,298	-				-1.0
4,573,298	-				+0.7
4,573,298	-				-0.2
4,573,298	-				-0.2
4,573,298	-				-0.6
4,573,298	-				-0.9
4,573,334	+				-0.8
4,573,396	+		SO4378	0.11	-1.5
4,573,545	-		SO4378	0.22	+0.7
4,573,546	+		SO4378	0.22	-0.0
4,573,651	+		SO4378	0.30	+1.5
4,573,704	+		SO4378	0.34	-1.2
4,573,704	+		SO4378	0.34	-0.4
4,573,706	+		SO4378	0.34	-0.9
4,573,712	-		SO4378	0.35	-0.6
4,573,714	-		SO4378	0.35	-0.0
4,573,795	+		SO4378	0.41	-0.9
4,573,843	+		SO4378	0.45	+0.4
4,573,851	-		SO4378	0.45	-1.7
4,573,852	-		SO4378	0.45	-0.1
4,573,865	+		SO4378	0.46	-0.3
4,573,874	-		SO4378	0.47	+0.1
4,573,916	+		SO4378	0.50	+0.6
4,573,938	-		SO4378	0.52	-1.3
4,574,060	+		SO4378	0.61	-1.4
4,574,079	-		SO4378	0.63	+0.5
4,574,105	-		SO4378	0.65	-0.5
4,574,110	+		SO4378	0.65	-0.2