Strain Fitness in Shewanella oneidensis MR-1 around SO4252

Experiment: Paraquat dichloride 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.5 mg/ml
4,427,522	-	dut	SO4250	0.48	-1.1
4,427,522	-	dut	SO4250	0.48	-2.9
4,427,522	-	dut	SO4250	0.48	-1.3
4,427,546	-	dut	SO4250	0.53	-0.5
4,427,622	+	dut	SO4250	0.69	+0.4
4,427,665	-	dut	SO4250	0.79	-1.0
4,427,791	-				-1.9
4,427,795	+				-3.4
4,427,840	-				-1.9
4,427,840	-				-1.6
4,427,863	+		SO4251	0.12	-1.8
4,427,908	+		SO4251	0.19	-1.7
4,427,993	+		SO4251	0.34	-0.9
4,428,036	+		SO4251	0.41	-2.1
4,428,057	+		SO4251	0.44	-0.4
4,428,232	-		SO4251	0.74	-1.2
4,428,252	+		SO4251	0.77	-0.9
4,428,338	-				-2.1
4,428,655	-				-0.2
4,428,777	+		SO4252	0.13	-0.9
4,428,795	+		SO4252	0.14	+0.2
4,428,803	-		SO4252	0.14	+0.5
4,428,805	+		SO4252	0.14	+0.7
4,428,837	-		SO4252	0.16	+0.0
4,428,871	-		SO4252	0.18	+0.1
4,428,985	+		SO4252	0.23	+0.7
4,429,036	+		SO4252	0.26	+0.7
4,429,036	+		SO4252	0.26	+0.6
4,429,039	-		SO4252	0.26	-0.1
4,429,044	-		SO4252	0.26	-1.0
4,429,044	-		SO4252	0.26	+0.5
4,429,104	-		SO4252	0.29	+0.7
4,429,151	+		SO4252	0.32	+0.6
4,429,189	-		SO4252	0.34	-0.3
4,429,200	-		SO4252	0.34	-0.3
4,429,229	+		SO4252	0.36	+0.3
4,429,255	+		SO4252	0.37	+1.7
4,429,313	-		SO4252	0.40	-0.4
4,429,342	-		SO4252	0.41	-1.6
4,429,502	-		SO4252	0.49	-2.4
4,429,527	-		SO4252	0.51	+0.2
4,429,558	+		SO4252	0.52	-0.2
4,429,634	-		SO4252	0.56	-0.0
4,429,698	-		SO4252	0.59	-0.5
4,429,711	+		SO4252	0.60	-0.4
4,429,711	+		SO4252	0.60	+0.3
4,429,735	+		SO4252	0.61	+0.9
4,429,743	-		SO4252	0.61	-0.2
4,429,743	-		SO4252	0.61	-0.8
4,429,743	-		SO4252	0.61	+1.0
4,429,790	+		SO4252	0.64	+0.6
4,429,803	-		SO4252	0.64	-2.4
4,429,848	+		SO4252	0.67	+0.1
4,429,911	+		SO4252	0.70	-0.4
4,430,039	+		SO4252	0.76	+0.1
4,430,039	+		SO4252	0.76	-0.5
4,430,040	+		SO4252	0.76	+0.8
4,430,047	-		SO4252	0.77	-0.8
4,430,047	-		SO4252	0.77	+1.5
4,430,047	-		SO4252	0.77	+0.6
4,430,095	+		SO4252	0.79	+0.5
4,430,160	-		SO4252	0.82	+0.1
4,430,167	-		SO4252	0.83	-0.9
4,430,172	-		SO4252	0.83	+0.3
4,430,184	-		SO4252	0.84	-0.9
4,430,238	+		SO4252	0.86	-0.2
4,430,248	+		SO4252	0.87	-0.5
4,430,308	+		SO4252	0.90	+0.1
4,430,308	+		SO4252	0.90	-0.6
4,430,308	+		SO4252	0.90	-0.1
4,430,316	-				+0.2
4,430,424	-				-0.1
4,430,434	-				-0.1
4,430,468	+				+0.4
4,430,658	+				+1.6
4,430,658	+				+0.1
4,430,658	+				-0.6
4,430,658	+				-1.5
4,430,659	+				-0.8
4,430,659	+				+0.7
4,430,659	+				+0.5
4,430,659	+				-0.7
4,430,659	+				-1.4
4,430,729	+				-0.1
4,430,729	+				+0.0
4,430,729	+				+0.6
4,431,425	-				-0.1
4,431,430	-				-0.1