Strain Fitness in Shewanella oneidensis MR-1 around SO3859

Experiment: Paraquat dichloride 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.5 mg/ml
4,004,973	-				-0.5
4,005,004	-				+0.4
4,005,010	+				-1.1
4,005,018	-				+0.4
4,005,076	-				+0.6
4,005,109	+				+0.5
4,005,118	-				+0.0
4,005,166	-				+0.3
4,005,257	+		SO3859	0.14	+1.3
4,005,257	+		SO3859	0.14	+0.6
4,005,257	+		SO3859	0.14	+0.3
4,005,292	-		SO3859	0.16	+0.6
4,005,373	+		SO3859	0.20	-0.6
4,005,375	+		SO3859	0.20	+1.7
4,005,380	+		SO3859	0.21	+0.1
4,005,383	-		SO3859	0.21	+1.0
4,005,388	-		SO3859	0.21	+0.3
4,005,467	+		SO3859	0.25	+0.0
4,005,475	-		SO3859	0.26	-2.6
4,005,477	+		SO3859	0.26	+0.5
4,005,514	+		SO3859	0.28	-0.4
4,005,514	+		SO3859	0.28	-0.7
4,005,555	+		SO3859	0.30	+0.5
4,005,583	+		SO3859	0.31	-1.8
4,005,583	+		SO3859	0.31	-0.1
4,005,583	+		SO3859	0.31	+0.6
4,005,583	+		SO3859	0.31	+0.2
4,005,591	-		SO3859	0.32	+0.6
4,005,591	-		SO3859	0.32	+0.1
4,005,591	-		SO3859	0.32	+1.1
4,005,591	-		SO3859	0.32	-0.3
4,005,591	-		SO3859	0.32	+0.9
4,005,591	-		SO3859	0.32	-0.0
4,005,591	-		SO3859	0.32	+0.7
4,005,591	-		SO3859	0.32	+0.5
4,005,591	-		SO3859	0.32	+0.1
4,005,591	-		SO3859	0.32	+0.8
4,005,592	-		SO3859	0.32	+0.8
4,005,596	+		SO3859	0.32	-0.1
4,005,717	+		SO3859	0.38	-2.5
4,005,934	-		SO3859	0.50	-0.5
4,005,988	-		SO3859	0.53	+0.9
4,006,078	+		SO3859	0.57	+0.7
4,006,079	-		SO3859	0.57	+0.1
4,006,086	-		SO3859	0.58	-0.2
4,006,088	+		SO3859	0.58	-0.5
4,006,093	+		SO3859	0.58	+0.8
4,006,101	-		SO3859	0.59	-0.9
4,006,149	-		SO3859	0.61	-0.8
4,006,159	+		SO3859	0.62	+1.0
4,006,245	+		SO3859	0.66	+0.6
4,006,245	+		SO3859	0.66	-0.0
4,006,253	-		SO3859	0.67	+0.1
4,006,254	-		SO3859	0.67	-0.2
4,006,254	-		SO3859	0.67	+0.9
4,006,290	+		SO3859	0.69	+0.3
4,006,300	-		SO3859	0.69	-0.3
4,006,320	+		SO3859	0.70	+1.0
4,006,328	-		SO3859	0.71	-0.2
4,006,434	-		SO3859	0.76	+0.8
4,006,548	+		SO3859	0.82	-0.5
4,006,548	+		SO3859	0.82	+0.7
4,006,556	-		SO3859	0.83	-0.6
4,006,556	-		SO3859	0.83	-0.8
4,006,556	-		SO3859	0.83	+1.4
4,006,645	-		SO3859	0.87	+0.4
4,006,679	-		SO3859	0.89	+0.4
4,006,685	+		SO3859	0.89	-0.0
4,006,744	+				+0.2
4,006,744	+				+0.1
4,006,744	+				-2.6
4,006,744	+				+0.2
4,006,744	+				-0.1
4,006,744	+				+0.7
4,006,744	+				+0.3
4,006,744	+				-0.5
4,006,752	-				+0.0
4,006,752	-				-0.7
4,006,752	-				+1.5
4,006,766	-				+0.1
4,006,825	+				-0.2
4,006,980	-		SO3860	0.12	+0.2
4,007,016	-		SO3860	0.16	-0.3
4,007,033	+		SO3860	0.18	+0.1
4,007,131	+		SO3860	0.30	-1.0
4,007,443	-		SO3860	0.70	-0.7
4,007,447	+		SO3860	0.70	-0.3
4,007,455	-		SO3860	0.71	-0.5
4,007,498	-		SO3860	0.76	+0.5
4,007,498	-		SO3860	0.76	-1.2
4,007,498	-		SO3860	0.76	-0.1
4,007,582	-		SO3860	0.87	+0.2
4,007,635	+				-3.2
4,007,664	+				-0.1
4,007,687	+				+0.4
4,007,705	+				+0.8
4,007,713	-				+0.0
4,007,725	-				-0.6
4,007,725	-				+0.2
4,007,756	+				+0.1
4,007,770	-				-0.3
4,007,797	+				+0.0
4,007,805	-				+0.9
4,007,831	+				-2.9
4,007,849	-				+0.8