Strain Fitness in Shewanella oneidensis MR-1 around SO3518

Experiment: Paraquat dichloride 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.5 mg/ml
3,671,863	-	ndh	SO3517	0.39	+2.2
3,671,863	-	ndh	SO3517	0.39	+1.3
3,672,024	+	ndh	SO3517	0.51	+2.1
3,672,114	+	ndh	SO3517	0.58	+2.3
3,672,121	-	ndh	SO3517	0.59	+1.2
3,672,192	+	ndh	SO3517	0.64	+1.4
3,672,241	+	ndh	SO3517	0.68	+2.0
3,672,241	+	ndh	SO3517	0.68	+0.5
3,672,241	+	ndh	SO3517	0.68	+1.9
3,672,259	-	ndh	SO3517	0.70	+1.4
3,672,297	-	ndh	SO3517	0.73	+1.1
3,672,362	-	ndh	SO3517	0.78	+1.2
3,672,387	+	ndh	SO3517	0.80	+2.2
3,672,391	+	ndh	SO3517	0.80	+1.5
3,672,401	+	ndh	SO3517	0.81	+2.2
3,672,401	+	ndh	SO3517	0.81	+1.9
3,672,401	+	ndh	SO3517	0.81	+1.1
3,672,401	+	ndh	SO3517	0.81	+1.4
3,672,401	+	ndh	SO3517	0.81	+1.7
3,672,401	+	ndh	SO3517	0.81	+1.9
3,672,409	-	ndh	SO3517	0.81	+0.5
3,672,440	+	ndh	SO3517	0.84	+1.6
3,672,451	+	ndh	SO3517	0.84	+2.0
3,672,459	-	ndh	SO3517	0.85	+1.3
3,672,462	+	ndh	SO3517	0.85	+0.2
3,672,462	+	ndh	SO3517	0.85	+1.9
3,672,524	+				+0.7
3,672,572	-				+1.6
3,672,590	-				+0.4
3,672,595	-				+2.5
3,672,630	-				+1.8
3,672,692	-				+1.4
3,672,702	+				+2.0
3,672,702	+				+1.1
3,672,710	-				+1.7
3,672,710	-				+1.3
3,672,710	-				+1.9
3,672,724	-				+0.8
3,672,791	-				-0.5
3,672,793	+				+0.9
3,674,224	-	glnB-2	SO3519	0.26	-0.1
3,674,316	+	glnB-2	SO3519	0.53	+1.8
3,674,341	+	glnB-2	SO3519	0.61	-0.1
3,674,344	-	glnB-2	SO3519	0.62	+0.1
3,674,363	+	glnB-2	SO3519	0.67	+1.0
3,674,395	-	glnB-2	SO3519	0.77	-1.0
3,674,509	+				+0.2
3,674,517	+				+0.6
3,674,517	+				+0.7
3,674,517	+				+0.4
3,674,525	-				-0.1
3,674,531	-				+0.0
3,674,533	+				+0.6
3,674,533	+				+0.1
3,674,541	-				-2.1
3,674,679	-				-0.7
3,674,679	-				-0.3
3,674,679	-				+1.0
3,674,690	+				-0.1
3,674,704	+				+0.9
3,674,707	-				-0.3
3,674,723	+				+0.3
3,674,731	-				+0.6
3,674,731	-				-0.8
3,674,733	-				-0.5
3,674,738	+				-0.8
3,674,738	+				+0.6
3,674,738	+				+0.3
3,674,744	+				+0.3
3,674,746	-				-0.2
3,674,746	-				-0.0
3,674,752	-				-0.4
3,674,752	-				+0.3
3,674,752	-				+0.0
3,674,757	+				-1.9
3,674,757	+				+0.6
3,674,759	+				+0.4
3,674,764	+				-0.5
3,674,765	-				-0.8
3,674,785	-		SO3520	0.13	-0.3
3,674,813	-		SO3520	0.18	-0.8
3,674,827	-		SO3520	0.21	+0.1
3,674,829	+		SO3520	0.21	-0.6
3,674,829	+		SO3520	0.21	-0.2
3,674,837	-		SO3520	0.23	-0.1
3,674,837	-		SO3520	0.23	-0.0
3,674,896	-		SO3520	0.35	-1.0
3,674,911	+		SO3520	0.37	-1.1
3,674,930	-		SO3520	0.41	+0.0
3,674,935	+		SO3520	0.42	-1.2
3,674,943	-		SO3520	0.44	-1.7
3,674,982	+		SO3520	0.51	+0.3
3,674,990	+		SO3520	0.53	+0.0
3,675,019	+		SO3520	0.58	+0.5
3,675,021	+		SO3520	0.59	-0.6
3,675,029	+		SO3520	0.60	+0.4