Strain Fitness in Shewanella oneidensis MR-1 around SO1902

Experiment: Paraquat dichloride 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.5 mg/ml
2,001,254	+				+0.6
2,001,322	+				+0.1
2,001,359	-				-1.2
2,001,431	+				+0.3
2,001,641	-	sugE	SO1901	0.47	-0.3
2,001,742	-	sugE	SO1901	0.79	-0.7
2,001,797	-				-1.0
2,001,797	-				-0.1
2,001,959	-				+0.2
2,002,013	+				+0.1
2,002,021	-				-1.2
2,002,021	-				-0.5
2,002,030	-				-0.0
2,002,081	+				-0.5
2,002,222	+	gnd	SO1902	0.12	-0.5
2,002,222	+	gnd	SO1902	0.12	-0.6
2,002,293	-	gnd	SO1902	0.16	+0.4
2,002,315	+	gnd	SO1902	0.18	-0.9
2,002,329	-	gnd	SO1902	0.19	+0.4
2,002,329	-	gnd	SO1902	0.19	-0.5
2,002,329	-	gnd	SO1902	0.19	-1.5
2,002,329	-	gnd	SO1902	0.19	-0.2
2,002,356	-	gnd	SO1902	0.20	+0.6
2,002,546	+	gnd	SO1902	0.33	-1.3
2,002,611	-	gnd	SO1902	0.37	-1.4
2,002,611	-	gnd	SO1902	0.37	+0.4
2,002,803	+	gnd	SO1902	0.50	-0.3
2,002,810	-	gnd	SO1902	0.50	-1.1
2,002,873	-	gnd	SO1902	0.54	-0.9
2,002,901	+	gnd	SO1902	0.56	-0.5
2,002,918	+	gnd	SO1902	0.57	-1.0
2,002,918	+	gnd	SO1902	0.57	-1.5
2,002,923	+	gnd	SO1902	0.57	+1.2
2,002,926	-	gnd	SO1902	0.58	-0.0
2,002,928	+	gnd	SO1902	0.58	+0.2
2,002,928	+	gnd	SO1902	0.58	-0.7
2,002,936	-	gnd	SO1902	0.58	-1.5
2,002,936	-	gnd	SO1902	0.58	-0.2
2,002,936	-	gnd	SO1902	0.58	-0.1
2,002,958	+	gnd	SO1902	0.60	-0.8
2,002,966	-	gnd	SO1902	0.60	+0.9
2,002,979	+	gnd	SO1902	0.61	-0.7
2,003,016	+	gnd	SO1902	0.64	-1.6
2,003,024	-	gnd	SO1902	0.64	-0.9
2,003,024	-	gnd	SO1902	0.64	-0.8
2,003,024	-	gnd	SO1902	0.64	-2.7
2,003,024	-	gnd	SO1902	0.64	-1.5
2,003,093	+	gnd	SO1902	0.69	-0.7
2,003,142	+	gnd	SO1902	0.72	-1.1
2,003,143	-	gnd	SO1902	0.72	-0.3
2,003,302	+	gnd	SO1902	0.82	-1.4
2,003,347	+	gnd	SO1902	0.85	+0.8
2,003,418	-	gnd	SO1902	0.90	-1.9
2,003,490	+				-0.3
2,003,490	+				-0.2
2,003,490	+				-1.5
2,003,498	-				-0.5
2,003,533	+				-0.9
2,003,546	+				+0.1
2,003,597	+				+0.3
2,003,597	+				-1.0
2,003,606	+				-3.6
2,003,614	-				-0.4
2,003,619	+				-1.0
2,003,641	-				-0.7
2,003,663	+				-0.4
2,003,671	-				-0.3
2,003,671	-				-0.9
2,003,703	+				-0.0
2,003,804	-				+0.0
2,003,811	-				+0.0
2,003,850	+				-1.4
2,003,857	+				-0.2
2,003,857	+				-0.6
2,003,857	+				-1.3
2,003,857	+				+0.8
2,003,857	+				-0.3
2,003,865	-				+0.6
2,003,865	-				-0.6
2,003,887	-				-0.2
2,003,937	-				+0.4
2,003,959	+		SO1903	0.14	-1.4
2,004,070	-		SO1903	0.34	-0.3
2,004,084	+		SO1903	0.37	-0.4
2,004,092	-				+0.7
2,004,092	-		SO1903	0.38	+0.4
2,004,093	+		SO1903	0.39	-0.4
2,004,108	+		SO1903	0.41	+0.0
2,004,115	-		SO1903	0.43	+0.9
2,004,131	+		SO1903	0.46	+0.2
2,004,132	+		SO1903	0.46	-1.6
2,004,139	+		SO1903	0.47	+0.5
2,004,139	+		SO1903	0.47	+0.7
2,004,139	+		SO1903	0.47	-0.1
2,004,145	+		SO1903	0.48	-0.5
2,004,145	+		SO1903	0.48	+0.4
2,004,147	-		SO1903	0.49	+0.6
2,004,147	-		SO1903	0.49	+0.4
2,004,153	-		SO1903	0.50	+0.9
2,004,175	+		SO1903	0.54	-1.4
2,004,189	+				+0.7
2,004,199	-		SO1903	0.58	+0.2
2,004,220	+		SO1903	0.62	-0.4
2,004,222	+		SO1903	0.62	-0.1
2,004,238	+		SO1903	0.65	-1.6
2,004,246	-		SO1903	0.67	-0.2
2,004,277	+		SO1903	0.73	-0.5
2,004,312	-		SO1903	0.79	-0.1
2,004,393	-				+0.7