Strain Fitness in Shewanella oneidensis MR-1 around SO1560

Experiment: Paraquat dichloride 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.5 mg/ml
1,635,810	+	phoR	SO1559	0.43	-0.7
1,635,846	+	phoR	SO1559	0.46	+0.4
1,636,021	+	phoR	SO1559	0.59	-0.0
1,636,021	+	phoR	SO1559	0.59	-1.3
1,636,021	+	phoR	SO1559	0.59	+0.8
1,636,021	+	phoR	SO1559	0.59	+0.5
1,636,029	-	phoR	SO1559	0.60	-0.3
1,636,105	+	phoR	SO1559	0.66	-0.6
1,636,138	-	phoR	SO1559	0.68	-0.3
1,636,138	-	phoR	SO1559	0.68	+0.7
1,636,155	-	phoR	SO1559	0.69	+0.6
1,636,210	+	phoR	SO1559	0.74	+0.6
1,636,210	+	phoR	SO1559	0.74	+0.1
1,636,218	-	phoR	SO1559	0.74	+0.5
1,636,218	-	phoR	SO1559	0.74	+0.7
1,636,218	-	phoR	SO1559	0.74	-0.3
1,636,261	+	phoR	SO1559	0.78	+0.2
1,636,309	-	phoR	SO1559	0.81	+1.1
1,636,331	+	phoR	SO1559	0.83	-0.9
1,636,331	+	phoR	SO1559	0.83	-2.8
1,636,338	+	phoR	SO1559	0.83	+0.2
1,636,427	+				+0.2
1,636,435	-				-0.8
1,636,449	+				+0.2
1,636,463	-				+0.8
1,636,505	+				-2.1
1,636,505	+				+0.4
1,636,536	-				+0.8
1,636,600	-				-0.4
1,636,726	+				+0.0
1,636,823	+				-5.1
1,636,823	+				-4.3
1,636,823	+				-3.7
1,636,831	-				-2.0
1,636,831	-				-1.0
1,636,836	-				-3.0
1,636,861	+				-2.8
1,636,911	-		SO1560	0.14	-1.6
1,636,977	-		SO1560	0.20	-3.0
1,636,977	-		SO1560	0.20	-1.4
1,637,070	+		SO1560	0.30	-2.8
1,637,227	-		SO1560	0.46	-2.0
1,637,273	-		SO1560	0.51	-2.6
1,637,381	-		SO1560	0.62	-1.5
1,637,388	-		SO1560	0.63	-2.3
1,637,582	-		SO1560	0.83	-2.2
1,637,603	+		SO1560	0.85	-1.6
1,637,611	-		SO1560	0.86	-2.2
1,637,640	+		SO1560	0.89	-3.3
1,637,658	-				-3.1
1,637,658	-				-1.0
1,637,658	-				-2.5
1,637,658	-				-3.2
1,637,658	-				-3.1
1,637,696	-				-1.4
1,637,698	+				-0.5
1,637,698	+				-0.4
1,637,706	-				-1.7
1,637,706	-				-1.2
1,637,706	-				-2.0
1,637,767	+				-0.9
1,637,952	-				-0.0
1,637,986	+				+1.3
1,638,139	+				+0.1
1,638,139	+				+0.5
1,638,147	-				-0.4
1,638,147	-				-0.4
1,638,147	-				-0.0
1,638,235	-				+0.2
1,638,242	+				+0.6
1,638,294	+				-0.1
1,638,319	-				+0.4
1,638,349	-				+0.4
1,638,375	-				-0.4
1,638,424	+				-0.1
1,638,424	+				+0.3
1,638,432	-				-1.3
1,638,432	-				+0.2
1,638,432	-				+0.3
1,638,432	-				+1.3
1,638,581	+		SO1561	0.17	+0.3
1,638,610	+		SO1561	0.19	-1.9
1,638,627	+		SO1561	0.20	+0.3
1,638,627	+		SO1561	0.20	-0.2
1,638,635	-		SO1561	0.20	-0.9
1,638,712	+		SO1561	0.24	+0.5