Strain Fitness in Shewanella oneidensis MR-1 around SO1459

Experiment: Paraquat dichloride 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.5 mg/ml
1,516,592	+		SO1458	0.23	-2.4
1,516,646	+		SO1458	0.27	-0.8
1,516,801	+		SO1458	0.39	-3.6
1,516,801	+		SO1458	0.39	-0.9
1,516,801	+		SO1458	0.39	-1.4
1,516,809	-		SO1458	0.40	-1.0
1,516,860	-		SO1458	0.44	-1.3
1,517,055	-		SO1458	0.59	-0.8
1,517,070	-		SO1458	0.60	-0.9
1,517,120	-		SO1458	0.64	-2.1
1,517,125	+		SO1458	0.64	-2.8
1,517,133	-		SO1458	0.65	-1.2
1,517,265	+		SO1458	0.75	-1.2
1,517,265	+		SO1458	0.75	-3.1
1,517,265	+		SO1458	0.75	-2.0
1,517,323	+		SO1458	0.79	-0.3
1,517,323	+		SO1458	0.79	-0.1
1,517,323	+		SO1458	0.79	-0.5
1,517,331	-		SO1458	0.80	-0.3
1,517,331	-		SO1458	0.80	-1.7
1,517,331	-		SO1458	0.80	-4.3
1,517,331	-		SO1458	0.80	-1.4
1,517,331	-		SO1458	0.80	-1.8
1,517,359	-		SO1458	0.82	+0.4
1,517,388	-		SO1458	0.84	-1.2
1,517,425	+		SO1458	0.87	+0.1
1,517,461	+				-0.9
1,517,579	-				+0.1
1,517,759	+		SO1459	0.25	-0.8
1,517,767	-		SO1459	0.27	-1.4
1,517,767	-		SO1459	0.27	-0.3
1,517,789	+		SO1459	0.30	-0.3
1,517,797	-		SO1459	0.31	-2.2
1,517,797	-		SO1459	0.31	-1.1
1,517,797	-		SO1459	0.31	+0.2
1,517,797	-		SO1459	0.31	-1.3
1,517,802	-		SO1459	0.32	+0.1
1,517,855	+		SO1459	0.40	+0.4
1,517,929	+		SO1459	0.51	-1.5
1,517,997	+		SO1459	0.61	-1.2
1,518,021	+		SO1459	0.65	-0.1
1,518,021	+		SO1459	0.65	-0.7
1,518,021	+		SO1459	0.65	-0.8
1,518,029	-		SO1459	0.66	-1.2
1,518,029	-		SO1459	0.66	-1.0
1,518,029	-		SO1459	0.66	-1.0
1,518,029	-		SO1459	0.66	-0.3
1,518,067	+		SO1459	0.72	-1.8
1,518,075	-		SO1459	0.73	-2.0
1,518,075	-		SO1459	0.73	-1.0
1,518,075	-		SO1459	0.73	-0.6
1,518,183	+		SO1459	0.89	-1.9
1,518,194	-				-1.1
1,518,228	-				-0.9
1,518,272	+				+0.4
1,518,272	+				-1.1
1,518,280	-				-1.8
1,518,280	-				-0.9
1,518,357	+				-3.4
1,518,367	-				-1.4
1,518,403	+				-1.5
1,518,410	-				-1.2
1,518,433	+				-3.6
1,518,441	-				-0.9
1,518,464	+		SO1460	0.11	-0.2
1,518,464	-		SO1460	0.11	-0.8
1,518,502	+		SO1460	0.14	-0.6
1,518,591	+		SO1460	0.20	-1.5
1,518,599	-		SO1460	0.21	+0.3
1,518,599	-		SO1460	0.21	+0.3
1,518,613	+		SO1460	0.22	-0.6
1,518,627	+		SO1460	0.23	-0.8
1,518,650	-		SO1460	0.25	-0.9
1,518,734	-		SO1460	0.31	-0.4
1,518,739	+		SO1460	0.31	-1.4
1,518,739	+		SO1460	0.31	-0.3
1,518,744	+		SO1460	0.32	-1.1
1,518,842	+		SO1460	0.39	-2.4
1,518,863	-		SO1460	0.41	-0.4
1,519,073	-		SO1460	0.56	-0.9
1,519,073	-		SO1460	0.56	-0.3
1,519,209	-		SO1460	0.66	+0.5
1,519,250	+		SO1460	0.69	-3.1