Experiment: Paraquat dichloride 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nqrF-1 and SO0908 are separated by 97 nucleotides SO0908 and SO0909 are separated by 42 nucleotides SO0909 and SO0910 are separated by 352 nucleotides
SO0907: nqrF-1 - NADH:ubiquinone oxidoreductase, Na translocating, beta subunit (NCBI ptt file), at 933,603 to 934,820
nqrF-1
SO0908: SO0908 - conserved domain protein (NCBI ptt file), at 934,918 to 935,235
SO0908
SO0909: SO0909 - hypothetical protein (NCBI ptt file), at 935,278 to 935,841
SO0909
SO0910: SO0910 - hypothetical protein (NCBI ptt file), at 936,194 to 937,228
SO0910
Position (kb) 935
936 Strain fitness (log2 ratio) -2
-1
0
1 at 934.339 kb on + strand, within nqrF-1 at 934.364 kb on + strand, within nqrF-1 at 934.486 kb on - strand, within nqrF-1 at 934.600 kb on + strand, within nqrF-1 at 934.624 kb on - strand, within nqrF-1 at 934.631 kb on + strand, within nqrF-1 at 934.641 kb on + strand, within nqrF-1 at 934.650 kb on + strand, within nqrF-1 at 934.724 kb on + strand at 934.731 kb on + strand at 934.862 kb on - strand at 934.990 kb on - strand, within SO0908 at 935.028 kb on + strand, within SO0908 at 935.028 kb on + strand, within SO0908 at 935.036 kb on - strand, within SO0908 at 935.036 kb on - strand, within SO0908 at 935.036 kb on - strand, within SO0908 at 935.036 kb on - strand, within SO0908 at 935.192 kb on + strand, within SO0908 at 935.197 kb on + strand, within SO0908 at 935.226 kb on - strand at 935.226 kb on - strand at 935.226 kb on - strand at 935.249 kb on - strand at 935.274 kb on - strand at 935.334 kb on + strand at 935.381 kb on + strand, within SO0909 at 935.390 kb on + strand, within SO0909 at 935.390 kb on + strand, within SO0909 at 935.397 kb on + strand, within SO0909 at 935.400 kb on + strand, within SO0909 at 935.415 kb on + strand, within SO0909 at 935.523 kb on + strand, within SO0909 at 935.523 kb on + strand, within SO0909 at 935.523 kb on + strand, within SO0909 at 935.523 kb on + strand, within SO0909 at 935.531 kb on - strand, within SO0909 at 935.531 kb on - strand, within SO0909 at 935.531 kb on - strand, within SO0909 at 935.531 kb on - strand, within SO0909 at 935.531 kb on - strand, within SO0909 at 935.531 kb on - strand, within SO0909 at 935.531 kb on - strand, within SO0909 at 935.531 kb on - strand, within SO0909 at 935.531 kb on - strand, within SO0909 at 935.531 kb on - strand, within SO0909 at 935.531 kb on - strand, within SO0909 at 935.531 kb on - strand, within SO0909 at 935.555 kb on + strand, within SO0909 at 935.577 kb on + strand, within SO0909 at 935.595 kb on - strand, within SO0909 at 935.664 kb on - strand, within SO0909 at 935.736 kb on - strand, within SO0909 at 935.774 kb on + strand, within SO0909 at 935.793 kb on + strand at 935.801 kb on - strand at 935.921 kb on - strand at 935.953 kb on - strand at 936.182 kb on + strand at 936.182 kb on + strand at 936.200 kb on - strand at 936.220 kb on - strand at 936.324 kb on + strand, within SO0910 at 936.490 kb on - strand, within SO0910 at 936.559 kb on + strand, within SO0910 at 936.567 kb on - strand, within SO0910 at 936.686 kb on - strand, within SO0910 at 936.691 kb on - strand, within SO0910 at 936.753 kb on + strand, within SO0910 at 936.753 kb on + strand, within SO0910 at 936.753 kb on + strand, within SO0910
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.5 mg/ml remove 934,339 + nqrF-1 SO0907 0.60 +0.5 934,364 + nqrF-1 SO0907 0.62 -2.7 934,486 - nqrF-1 SO0907 0.72 -0.3 934,600 + nqrF-1 SO0907 0.82 -0.2 934,624 - nqrF-1 SO0907 0.84 +0.2 934,631 + nqrF-1 SO0907 0.84 +0.2 934,641 + nqrF-1 SO0907 0.85 -1.2 934,650 + nqrF-1 SO0907 0.86 -0.3 934,724 + -0.7 934,731 + +0.6 934,862 - -2.1 934,990 - SO0908 0.23 +0.5 935,028 + SO0908 0.35 -0.4 935,028 + SO0908 0.35 +0.6 935,036 - SO0908 0.37 -0.0 935,036 - SO0908 0.37 -0.2 935,036 - SO0908 0.37 -0.6 935,036 - SO0908 0.37 -0.2 935,192 + SO0908 0.86 +1.0 935,197 + SO0908 0.88 -0.1 935,226 - +0.6 935,226 - -0.5 935,226 - +0.2 935,249 - +0.0 935,274 - -0.3 935,334 + +1.0 935,381 + SO0909 0.18 -0.5 935,390 + SO0909 0.20 -1.0 935,390 + SO0909 0.20 +0.2 935,397 + SO0909 0.21 -2.1 935,400 + SO0909 0.22 -0.4 935,415 + SO0909 0.24 -0.3 935,523 + SO0909 0.43 +0.1 935,523 + SO0909 0.43 -0.5 935,523 + SO0909 0.43 +0.4 935,523 + SO0909 0.43 +0.3 935,531 - SO0909 0.45 +0.2 935,531 - SO0909 0.45 -0.0 935,531 - SO0909 0.45 -1.0 935,531 - SO0909 0.45 +0.5 935,531 - SO0909 0.45 -1.4 935,531 - SO0909 0.45 -0.6 935,531 - SO0909 0.45 -0.7 935,531 - SO0909 0.45 -0.0 935,531 - SO0909 0.45 -2.0 935,531 - SO0909 0.45 +0.5 935,531 - SO0909 0.45 +0.4 935,531 - SO0909 0.45 -0.2 935,555 + SO0909 0.49 +0.2 935,577 + SO0909 0.53 +0.5 935,595 - SO0909 0.56 -0.4 935,664 - SO0909 0.68 +0.1 935,736 - SO0909 0.81 +0.0 935,774 + SO0909 0.88 -0.2 935,793 + +0.4 935,801 - -0.1 935,921 - +0.5 935,953 - -0.6 936,182 + -0.0 936,182 + +1.6 936,200 - +0.1 936,220 - -0.8 936,324 + SO0910 0.13 -0.6 936,490 - SO0910 0.29 -0.3 936,559 + SO0910 0.35 +0.9 936,567 - SO0910 0.36 +1.0 936,686 - SO0910 0.48 +0.1 936,691 - SO0910 0.48 -0.7 936,753 + SO0910 0.54 -1.2 936,753 + SO0910 0.54 +0.7 936,753 + SO0910 0.54 -0.2
Or see this region's nucleotide sequence