Strain Fitness in Shewanella oneidensis MR-1 around SO0551

Experiment: Paraquat dichloride 0.5 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSO0549 and SO0550 are separated by 67 nucleotidesSO0550 and SO0551 are separated by 89 nucleotidesSO0551 and SO0552 are separated by 6 nucleotidesSO0552 and SO0553 are separated by 151 nucleotides SO0549: SO0549 - chemotaxis protein CheY/response regulator receiver domain protein (NCBI ptt file), at 571,288 to 572,091 SO0549 SO0550: SO0550 - hypothetical protein (NCBI ptt file), at 572,159 to 572,578 SO0550 SO0551: SO0551 - conserved hypothetical protein (NCBI ptt file), at 572,668 to 573,177 SO0551 SO0552: SO0552 - hypothetical protein (NCBI ptt file), at 573,184 to 573,498 SO0552 SO0553: SO0553 - hypothetical protein (NCBI ptt file), at 573,650 to 574,006 SO0553 Position (kb) 572 573 574Strain fitness (log2 ratio) -2 -1 0 1at 571.682 kb on + strand, within SO0549at 571.682 kb on + strand, within SO0549at 571.694 kb on - strand, within SO0549at 571.694 kb on - strand, within SO0549at 571.726 kb on + strand, within SO0549at 571.893 kb on + strand, within SO0549at 571.945 kb on - strand, within SO0549at 572.089 kb on - strandat 572.094 kb on + strandat 572.123 kb on - strandat 572.211 kb on + strand, within SO0550at 572.211 kb on + strand, within SO0550at 572.252 kb on - strand, within SO0550at 572.269 kb on - strand, within SO0550at 572.278 kb on - strand, within SO0550at 572.305 kb on - strand, within SO0550at 572.331 kb on + strand, within SO0550at 572.336 kb on + strand, within SO0550at 572.350 kb on + strand, within SO0550at 572.351 kb on + strand, within SO0550at 572.358 kb on - strand, within SO0550at 572.358 kb on - strand, within SO0550at 572.358 kb on - strand, within SO0550at 572.358 kb on - strand, within SO0550at 572.358 kb on - strand, within SO0550at 572.358 kb on - strand, within SO0550at 572.358 kb on - strand, within SO0550at 572.389 kb on + strand, within SO0550at 572.397 kb on - strand, within SO0550at 572.429 kb on + strand, within SO0550at 572.437 kb on + strand, within SO0550at 572.437 kb on + strand, within SO0550at 572.444 kb on + strand, within SO0550at 572.445 kb on - strand, within SO0550at 572.445 kb on - strand, within SO0550at 572.452 kb on + strand, within SO0550at 572.460 kb on - strand, within SO0550at 572.475 kb on + strand, within SO0550at 572.475 kb on + strand, within SO0550at 572.475 kb on + strand, within SO0550at 572.483 kb on - strand, within SO0550at 572.493 kb on - strand, within SO0550at 572.512 kb on + strand, within SO0550at 572.544 kb on + strandat 572.552 kb on - strandat 572.573 kb on + strandat 572.598 kb on - strandat 572.608 kb on - strandat 572.628 kb on + strandat 572.727 kb on + strand, within SO0551at 572.735 kb on - strand, within SO0551at 572.777 kb on + strand, within SO0551at 572.844 kb on - strand, within SO0551at 572.856 kb on - strand, within SO0551at 572.934 kb on - strand, within SO0551at 573.326 kb on - strand, within SO0552at 573.378 kb on + strand, within SO0552at 573.386 kb on - strand, within SO0552at 573.386 kb on - strand, within SO0552at 573.400 kb on - strand, within SO0552at 573.412 kb on + strand, within SO0552at 573.422 kb on + strand, within SO0552at 573.472 kb on + strandat 573.480 kb on - strandat 573.480 kb on - strandat 573.480 kb on - strandat 573.485 kb on + strandat 573.555 kb on + strandat 573.555 kb on + strandat 573.688 kb on + strand, within SO0553at 573.738 kb on - strand, within SO0553at 573.774 kb on - strand, within SO0553at 573.774 kb on - strand, within SO0553at 573.774 kb on - strand, within SO0553at 573.778 kb on + strand, within SO0553at 573.784 kb on - strand, within SO0553at 573.877 kb on + strand, within SO0553at 573.885 kb on - strand, within SO0553at 573.979 kb on + strandat 573.991 kb on + strandat 573.991 kb on + strandat 574.142 kb on + strandat 574.150 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.5 mg/ml
remove
571,682 + SO0549 0.49 +1.1
571,682 + SO0549 0.49 +0.7
571,694 - SO0549 0.50 -0.1
571,694 - SO0549 0.50 +0.5
571,726 + SO0549 0.54 -0.3
571,893 + SO0549 0.75 -0.1
571,945 - SO0549 0.82 -0.1
572,089 - -0.7
572,094 + -2.1
572,123 - -0.3
572,211 + SO0550 0.12 +0.1
572,211 + SO0550 0.12 +0.0
572,252 - SO0550 0.22 -0.5
572,269 - SO0550 0.26 +0.9
572,278 - SO0550 0.28 +0.1
572,305 - SO0550 0.35 +0.5
572,331 + SO0550 0.41 +0.2
572,336 + SO0550 0.42 +0.1
572,350 + SO0550 0.45 -0.1
572,351 + SO0550 0.46 -1.0
572,358 - SO0550 0.47 -0.6
572,358 - SO0550 0.47 -0.5
572,358 - SO0550 0.47 -1.7
572,358 - SO0550 0.47 -0.9
572,358 - SO0550 0.47 -0.5
572,358 - SO0550 0.47 -0.0
572,358 - SO0550 0.47 +0.0
572,389 + SO0550 0.55 +0.6
572,397 - SO0550 0.57 +1.3
572,429 + SO0550 0.64 -0.3
572,437 + SO0550 0.66 -1.1
572,437 + SO0550 0.66 +0.0
572,444 + SO0550 0.68 +0.4
572,445 - SO0550 0.68 +0.6
572,445 - SO0550 0.68 -0.0
572,452 + SO0550 0.70 -1.3
572,460 - SO0550 0.72 -0.6
572,475 + SO0550 0.75 +0.3
572,475 + SO0550 0.75 -1.9
572,475 + SO0550 0.75 +0.1
572,483 - SO0550 0.77 -0.3
572,493 - SO0550 0.80 -0.7
572,512 + SO0550 0.84 +0.1
572,544 + -0.5
572,552 - -0.7
572,573 + -0.4
572,598 - -0.1
572,608 - +0.6
572,628 + -0.1
572,727 + SO0551 0.12 +1.7
572,735 - SO0551 0.13 +0.2
572,777 + SO0551 0.21 +1.6
572,844 - SO0551 0.35 +1.6
572,856 - SO0551 0.37 +0.8
572,934 - SO0551 0.52 +0.1
573,326 - SO0552 0.45 +0.4
573,378 + SO0552 0.62 -0.1
573,386 - SO0552 0.64 +0.1
573,386 - SO0552 0.64 +1.0
573,400 - SO0552 0.69 +0.9
573,412 + SO0552 0.72 -0.2
573,422 + SO0552 0.76 +0.4
573,472 + +0.4
573,480 - +0.3
573,480 - +0.5
573,480 - -0.3
573,485 + -0.1
573,555 + -1.4
573,555 + +0.9
573,688 + SO0553 0.11 +0.3
573,738 - SO0553 0.25 -1.2
573,774 - SO0553 0.35 -0.4
573,774 - SO0553 0.35 +0.7
573,774 - SO0553 0.35 -0.5
573,778 + SO0553 0.36 +0.0
573,784 - SO0553 0.38 -0.1
573,877 + SO0553 0.64 -0.1
573,885 - SO0553 0.66 -0.1
573,979 + -0.3
573,991 + +0.4
573,991 + +0.1
574,142 + +0.7
574,150 - -0.1

Or see this region's nucleotide sequence