Strain Fitness in Shewanella oneidensis MR-1 around SO0075

Experiment: Paraquat dichloride 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.5 mg/ml
86,162	-		SO0074	0.41	-0.5
86,199	+		SO0074	0.44	-0.4
86,203	+		SO0074	0.44	-0.2
86,204	+		SO0074	0.44	-0.1
86,212	-		SO0074	0.45	-2.6
86,224	+		SO0074	0.46	-0.6
86,232	+		SO0074	0.46	+0.1
86,234	+		SO0074	0.47	-0.1
86,262	+		SO0074	0.49	-0.3
86,357	+		SO0074	0.56	-0.8
86,365	-		SO0074	0.57	-0.2
86,399	+		SO0074	0.59	-0.4
86,452	+		SO0074	0.63	+0.5
86,552	+		SO0074	0.71	-0.7
86,552	+		SO0074	0.71	-0.5
86,620	-		SO0074	0.76	-1.6
86,620	-		SO0074	0.76	-2.2
86,648	+		SO0074	0.78	+1.3
86,803	-				-0.2
86,803	-				+0.2
86,810	-				-0.0
86,815	+				+0.6
86,864	+				-0.4
86,892	-				+0.6
86,925	+				+0.5
86,933	-				-0.1
86,933	-				-0.2
87,275	-				-0.9
87,285	-				-1.5
87,285	-				-1.1
87,287	+				-0.8
87,415	-		SO0075	0.16	-0.7
87,421	+		SO0075	0.16	-2.5
87,429	-		SO0075	0.16	-1.8
87,436	-		SO0075	0.17	-0.8
87,474	+		SO0075	0.19	-0.6
87,612	+		SO0075	0.27	-0.5
87,647	-		SO0075	0.29	-1.7
87,647	-		SO0075	0.29	-1.0
87,680	-		SO0075	0.31	-0.0
87,680	-		SO0075	0.31	-0.9
87,693	-		SO0075	0.32	+0.2
87,726	+		SO0075	0.34	-0.4
87,756	+		SO0075	0.36	-1.8
87,766	+		SO0075	0.36	-1.8
87,774	-		SO0075	0.37	-0.0
87,776	+		SO0075	0.37	-0.8
87,776	+		SO0075	0.37	-0.8
87,784	-		SO0075	0.37	-0.5
87,787	-		SO0075	0.37	-0.6
87,857	+		SO0075	0.42	-0.7
87,857	+		SO0075	0.42	+0.9
87,871	-		SO0075	0.42	-1.8
87,902	-		SO0075	0.44	+0.7
87,912	+		SO0075	0.45	-0.4
87,912	+		SO0075	0.45	-0.3
87,994	+		SO0075	0.50	-0.1
88,086	-		SO0075	0.55	-1.5
88,086	-		SO0075	0.55	-1.0
88,091	+		SO0075	0.55	-0.9
88,163	+		SO0075	0.59	-0.5
88,289	-		SO0075	0.67	-1.4
88,289	-		SO0075	0.67	-0.9
88,376	+		SO0075	0.72	-1.7
88,376	+		SO0075	0.72	-0.4
88,376	+		SO0075	0.72	+0.1
88,384	-		SO0075	0.72	+0.0
88,384	-		SO0075	0.72	-0.0
88,489	+		SO0075	0.79	-0.9
88,501	-		SO0075	0.79	-0.2
88,507	-		SO0075	0.80	-0.8
88,507	-		SO0075	0.80	-0.7
88,538	+		SO0075	0.81	-1.0
88,546	+		SO0075	0.82	-0.1
88,707	+				-0.0
88,768	+				-1.2
88,784	+				-1.3
88,784	+				-1.3
88,792	-				-0.3
88,965	+				+1.1
88,965	+				+0.1
88,978	+				+0.4
88,980	+				+1.0
89,037	+				+0.8
89,174	+				-0.1
89,398	+		SO0076	0.16	+0.3
89,433	-		SO0076	0.18	-0.3
89,435	+		SO0076	0.18	+0.5
89,598	-		SO0076	0.24	-0.1
89,608	-		SO0076	0.25	-1.2
89,646	+		SO0076	0.26	+0.8
89,646	+		SO0076	0.26	+0.2
89,646	+		SO0076	0.26	-0.3
89,654	-		SO0076	0.26	+0.1
89,712	-		SO0076	0.29	-0.4
89,783	-		SO0076	0.32	-0.6
89,826	-		SO0076	0.33	-1.2
89,829	-		SO0076	0.34	+1.2