Experiment: Paraquat dichloride 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0054 and SO0055 are separated by 222 nucleotides SO0055 and SO0056 are separated by 387 nucleotides
SO0054: SO0054 - conserved hypothetical protein TIGR00275 (NCBI ptt file), at 59,949 to 61,139
SO0054
SO0055: SO0055 - conserved domain protein (NCBI ptt file), at 61,362 to 63,041
SO0055
SO0056: SO0056 - transporter, putative (NCBI ptt file), at 63,429 to 64,187
SO0056
Position (kb) 61
62
63
64 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 60.376 kb on + strand, within SO0054 at 60.381 kb on + strand, within SO0054 at 60.384 kb on - strand, within SO0054 at 60.467 kb on + strand, within SO0054 at 60.475 kb on + strand, within SO0054 at 60.475 kb on - strand, within SO0054 at 60.499 kb on + strand, within SO0054 at 60.534 kb on - strand, within SO0054 at 60.596 kb on - strand, within SO0054 at 60.636 kb on + strand, within SO0054 at 60.644 kb on - strand, within SO0054 at 60.644 kb on - strand, within SO0054 at 60.644 kb on - strand, within SO0054 at 60.657 kb on + strand, within SO0054 at 60.657 kb on + strand, within SO0054 at 60.665 kb on - strand, within SO0054 at 60.694 kb on + strand, within SO0054 at 60.794 kb on + strand, within SO0054 at 60.802 kb on + strand, within SO0054 at 60.802 kb on + strand, within SO0054 at 60.802 kb on + strand, within SO0054 at 60.802 kb on + strand, within SO0054 at 60.802 kb on - strand, within SO0054 at 60.802 kb on - strand, within SO0054 at 60.810 kb on - strand, within SO0054 at 60.810 kb on - strand, within SO0054 at 60.810 kb on - strand, within SO0054 at 60.815 kb on - strand, within SO0054 at 60.896 kb on + strand, within SO0054 at 60.920 kb on + strand, within SO0054 at 60.930 kb on + strand, within SO0054 at 60.933 kb on - strand, within SO0054 at 60.938 kb on - strand, within SO0054 at 60.938 kb on - strand, within SO0054 at 60.938 kb on - strand, within SO0054 at 60.991 kb on + strand, within SO0054 at 60.991 kb on + strand, within SO0054 at 60.991 kb on + strand, within SO0054 at 60.991 kb on + strand, within SO0054 at 60.991 kb on + strand, within SO0054 at 60.999 kb on - strand, within SO0054 at 60.999 kb on - strand, within SO0054 at 61.083 kb on - strand at 61.107 kb on - strand at 61.116 kb on - strand at 61.134 kb on + strand at 61.142 kb on - strand at 61.149 kb on + strand at 61.154 kb on + strand at 61.154 kb on + strand at 61.157 kb on - strand at 61.157 kb on - strand at 61.204 kb on + strand at 61.209 kb on + strand at 61.349 kb on + strand at 61.357 kb on - strand at 61.357 kb on - strand at 61.359 kb on + strand at 61.359 kb on + strand at 61.359 kb on + strand at 61.359 kb on + strand at 61.359 kb on + strand at 61.359 kb on + strand at 61.360 kb on + strand at 61.367 kb on - strand at 61.367 kb on - strand at 61.367 kb on - strand at 61.380 kb on + strand at 61.386 kb on - strand at 61.445 kb on - strand at 61.522 kb on + strand at 61.525 kb on - strand at 61.525 kb on - strand at 61.539 kb on + strand, within SO0055 at 61.547 kb on - strand, within SO0055 at 61.564 kb on + strand, within SO0055 at 61.577 kb on - strand, within SO0055 at 61.585 kb on + strand, within SO0055 at 61.593 kb on - strand, within SO0055 at 61.632 kb on + strand, within SO0055 at 61.640 kb on - strand, within SO0055 at 61.640 kb on - strand, within SO0055 at 61.640 kb on - strand, within SO0055 at 61.678 kb on + strand, within SO0055 at 61.686 kb on + strand, within SO0055 at 61.696 kb on + strand, within SO0055 at 61.696 kb on + strand, within SO0055 at 61.704 kb on - strand, within SO0055 at 61.726 kb on - strand, within SO0055 at 61.735 kb on - strand, within SO0055 at 61.746 kb on - strand, within SO0055 at 61.755 kb on + strand, within SO0055 at 61.784 kb on + strand, within SO0055 at 61.784 kb on - strand, within SO0055 at 61.804 kb on - strand, within SO0055 at 61.819 kb on + strand, within SO0055 at 61.819 kb on + strand, within SO0055 at 61.869 kb on - strand, within SO0055 at 61.869 kb on - strand, within SO0055 at 61.869 kb on - strand, within SO0055 at 61.869 kb on - strand, within SO0055 at 61.878 kb on + strand, within SO0055 at 61.916 kb on - strand, within SO0055 at 62.082 kb on - strand, within SO0055 at 62.094 kb on - strand, within SO0055 at 62.094 kb on - strand, within SO0055 at 62.247 kb on - strand, within SO0055 at 62.247 kb on - strand, within SO0055 at 62.362 kb on + strand, within SO0055 at 62.411 kb on + strand, within SO0055 at 62.417 kb on + strand, within SO0055 at 62.417 kb on + strand, within SO0055 at 62.529 kb on + strand, within SO0055 at 62.581 kb on + strand, within SO0055 at 62.581 kb on + strand, within SO0055 at 62.589 kb on - strand, within SO0055 at 62.589 kb on - strand, within SO0055 at 62.589 kb on - strand, within SO0055 at 62.589 kb on - strand, within SO0055 at 62.591 kb on + strand, within SO0055 at 62.604 kb on + strand, within SO0055 at 62.690 kb on + strand, within SO0055 at 62.695 kb on + strand, within SO0055 at 62.742 kb on + strand, within SO0055 at 62.750 kb on - strand, within SO0055 at 62.750 kb on - strand, within SO0055 at 62.750 kb on - strand, within SO0055 at 62.769 kb on - strand, within SO0055 at 62.775 kb on + strand, within SO0055 at 62.781 kb on + strand, within SO0055 at 62.789 kb on - strand, within SO0055 at 62.789 kb on - strand, within SO0055 at 62.866 kb on + strand, within SO0055 at 62.866 kb on + strand, within SO0055 at 62.874 kb on - strand at 62.877 kb on + strand at 62.882 kb on + strand at 62.951 kb on + strand at 62.951 kb on + strand at 62.951 kb on + strand at 62.951 kb on + strand at 62.951 kb on + strand at 62.959 kb on - strand at 62.959 kb on - strand at 62.959 kb on - strand at 62.959 kb on - strand at 63.003 kb on - strand at 63.033 kb on - strand at 63.150 kb on + strand at 63.151 kb on - strand at 63.183 kb on - strand at 63.202 kb on - strand at 63.210 kb on - strand at 63.217 kb on - strand at 63.236 kb on + strand at 63.255 kb on - strand at 63.266 kb on + strand at 63.274 kb on - strand at 63.274 kb on - strand at 63.301 kb on + strand at 63.344 kb on - strand at 63.349 kb on - strand at 63.357 kb on + strand at 63.406 kb on - strand at 63.498 kb on + strand at 63.541 kb on - strand, within SO0056 at 63.587 kb on + strand, within SO0056 at 63.587 kb on + strand, within SO0056 at 63.587 kb on + strand, within SO0056 at 63.595 kb on - strand, within SO0056 at 63.678 kb on + strand, within SO0056 at 63.678 kb on + strand, within SO0056 at 63.678 kb on + strand, within SO0056 at 63.686 kb on - strand, within SO0056 at 63.843 kb on - strand, within SO0056 at 63.845 kb on + strand, within SO0056 at 63.845 kb on + strand, within SO0056 at 63.845 kb on + strand, within SO0056 at 63.848 kb on - strand, within SO0056 at 63.853 kb on - strand, within SO0056 at 63.853 kb on - strand, within SO0056 at 63.853 kb on - strand, within SO0056 at 63.853 kb on - strand, within SO0056 at 63.854 kb on - strand, within SO0056 at 63.859 kb on - strand, within SO0056 at 63.912 kb on + strand, within SO0056 at 63.920 kb on - strand, within SO0056 at 64.031 kb on + strand, within SO0056
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.5 mg/ml remove 60,376 + SO0054 0.36 +0.2 60,381 + SO0054 0.36 -0.8 60,384 - SO0054 0.37 +0.6 60,467 + SO0054 0.43 -0.1 60,475 + SO0054 0.44 -1.7 60,475 - SO0054 0.44 -0.3 60,499 + SO0054 0.46 +0.2 60,534 - SO0054 0.49 +0.6 60,596 - SO0054 0.54 +0.0 60,636 + SO0054 0.58 -0.2 60,644 - SO0054 0.58 +1.2 60,644 - SO0054 0.58 +0.1 60,644 - SO0054 0.58 +0.2 60,657 + SO0054 0.59 -1.1 60,657 + SO0054 0.59 -0.1 60,665 - SO0054 0.60 +0.8 60,694 + SO0054 0.63 -1.6 60,794 + SO0054 0.71 +0.1 60,802 + SO0054 0.72 +0.3 60,802 + SO0054 0.72 -2.0 60,802 + SO0054 0.72 +1.2 60,802 + SO0054 0.72 -0.3 60,802 - SO0054 0.72 +1.0 60,802 - SO0054 0.72 -0.6 60,810 - SO0054 0.72 -0.7 60,810 - SO0054 0.72 +0.5 60,810 - SO0054 0.72 +0.7 60,815 - SO0054 0.73 -1.0 60,896 + SO0054 0.80 +1.0 60,920 + SO0054 0.82 -0.3 60,930 + SO0054 0.82 +0.2 60,933 - SO0054 0.83 +0.6 60,938 - SO0054 0.83 -1.7 60,938 - SO0054 0.83 +0.7 60,938 - SO0054 0.83 +0.3 60,991 + SO0054 0.87 -0.4 60,991 + SO0054 0.87 +0.8 60,991 + SO0054 0.87 +1.1 60,991 + SO0054 0.87 +0.1 60,991 + SO0054 0.87 +0.4 60,999 - SO0054 0.88 +0.3 60,999 - SO0054 0.88 +1.5 61,083 - +0.3 61,107 - +0.7 61,116 - +0.0 61,134 + +0.1 61,142 - -0.5 61,149 + +0.8 61,154 + -2.0 61,154 + -0.5 61,157 - +1.2 61,157 - -0.4 61,204 + +0.4 61,209 + +0.5 61,349 + -1.2 61,357 - +1.5 61,357 - -0.8 61,359 + -0.1 61,359 + +1.8 61,359 + -0.0 61,359 + +0.3 61,359 + +0.3 61,359 + +0.3 61,360 + +0.2 61,367 - -0.3 61,367 - -0.5 61,367 - +0.9 61,380 + +0.6 61,386 - +0.5 61,445 - -0.3 61,522 + -0.3 61,525 - +0.3 61,525 - -0.7 61,539 + SO0055 0.11 +0.1 61,547 - SO0055 0.11 +1.5 61,564 + SO0055 0.12 -2.0 61,577 - SO0055 0.13 -0.6 61,585 + SO0055 0.13 -0.2 61,593 - SO0055 0.14 +0.7 61,632 + SO0055 0.16 +0.0 61,640 - SO0055 0.17 +0.2 61,640 - SO0055 0.17 +1.1 61,640 - SO0055 0.17 +0.2 61,678 + SO0055 0.19 +0.0 61,686 + SO0055 0.19 -0.0 61,696 + SO0055 0.20 -0.7 61,696 + SO0055 0.20 -0.1 61,704 - SO0055 0.20 +0.7 61,726 - SO0055 0.22 -0.1 61,735 - SO0055 0.22 +0.6 61,746 - SO0055 0.23 -0.1 61,755 + SO0055 0.23 +0.5 61,784 + SO0055 0.25 +0.3 61,784 - SO0055 0.25 -0.8 61,804 - SO0055 0.26 +1.0 61,819 + SO0055 0.27 -0.1 61,819 + SO0055 0.27 -0.2 61,869 - SO0055 0.30 -0.7 61,869 - SO0055 0.30 -3.2 61,869 - SO0055 0.30 -1.5 61,869 - SO0055 0.30 +0.2 61,878 + SO0055 0.31 +0.1 61,916 - SO0055 0.33 -0.1 62,082 - SO0055 0.43 -1.2 62,094 - SO0055 0.44 +0.2 62,094 - SO0055 0.44 +1.1 62,247 - SO0055 0.53 +1.6 62,247 - SO0055 0.53 -0.2 62,362 + SO0055 0.60 -0.8 62,411 + SO0055 0.62 -0.0 62,417 + SO0055 0.63 +0.6 62,417 + SO0055 0.63 +0.1 62,529 + SO0055 0.69 +0.3 62,581 + SO0055 0.73 -0.8 62,581 + SO0055 0.73 -0.4 62,589 - SO0055 0.73 +1.5 62,589 - SO0055 0.73 -0.3 62,589 - SO0055 0.73 -1.3 62,589 - SO0055 0.73 +0.9 62,591 + SO0055 0.73 -0.1 62,604 + SO0055 0.74 -0.1 62,690 + SO0055 0.79 +0.1 62,695 + SO0055 0.79 +0.1 62,742 + SO0055 0.82 +1.0 62,750 - SO0055 0.83 -0.2 62,750 - SO0055 0.83 -0.9 62,750 - SO0055 0.83 +0.0 62,769 - SO0055 0.84 +0.1 62,775 + SO0055 0.84 +1.2 62,781 + SO0055 0.84 +0.3 62,789 - SO0055 0.85 +0.0 62,789 - SO0055 0.85 -1.3 62,866 + SO0055 0.90 +0.6 62,866 + SO0055 0.90 +0.2 62,874 - +0.2 62,877 + -2.3 62,882 + -0.2 62,951 + -0.9 62,951 + +0.9 62,951 + +0.6 62,951 + +2.3 62,951 + -1.9 62,959 - -0.1 62,959 - -0.3 62,959 - -0.1 62,959 - -0.2 63,003 - -0.3 63,033 - -0.2 63,150 + +0.0 63,151 - +2.1 63,183 - +0.5 63,202 - -0.2 63,210 - +0.9 63,217 - +0.3 63,236 + -0.6 63,255 - -0.0 63,266 + +0.0 63,274 - +0.8 63,274 - -0.4 63,301 + -1.3 63,344 - -1.5 63,349 - -0.1 63,357 + +0.8 63,406 - +0.4 63,498 + +0.4 63,541 - SO0056 0.15 +0.4 63,587 + SO0056 0.21 -1.5 63,587 + SO0056 0.21 +1.1 63,587 + SO0056 0.21 -0.1 63,595 - SO0056 0.22 +0.0 63,678 + SO0056 0.33 +0.7 63,678 + SO0056 0.33 -0.1 63,678 + SO0056 0.33 -0.5 63,686 - SO0056 0.34 -0.4 63,843 - SO0056 0.55 +0.0 63,845 + SO0056 0.55 +1.4 63,845 + SO0056 0.55 -0.8 63,845 + SO0056 0.55 -0.1 63,848 - SO0056 0.55 +0.6 63,853 - SO0056 0.56 -1.2 63,853 - SO0056 0.56 +0.8 63,853 - SO0056 0.56 +0.0 63,853 - SO0056 0.56 -0.0 63,854 - SO0056 0.56 +0.4 63,859 - SO0056 0.57 +0.4 63,912 + SO0056 0.64 +0.0 63,920 - SO0056 0.65 +0.4 64,031 + SO0056 0.79 -0.2
Or see this region's nucleotide sequence